RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ANO1Q5XXA6 986 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 SEPT14Q6ZU15 432 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 RNF180Q86T96 592 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 CCDC83Q8IWF9 413 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 REXO1Q8N1G1 1221 aaKnown RBP16.33■□□□□ 0.2
NUP54-216ENST00000514901 AP5M1Q9H0R1 490 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 GNEQ9Y223 722 aaKnown RBP16.33■□□□□ 0.2
NUP54-216ENST00000514901 DNM1LO00429 736 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 FARP2O94887 1054 aaPredicted RBP16.32■□□□□ 0.2
NUP54-216ENST00000514901 FDPSP14324 419 aaKnown RBP16.32■□□□□ 0.2
NUP54-216ENST00000514901 SMPD1P17405 629 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 GJA9P57773 515 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 NKX3-2P78367 333 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 NECAB2Q7Z6G3 386 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 DAGLBQ8NCG7 672 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 TSEN34Q9BSV6 310 aaKnown RBP16.32■□□□□ 0.2
NUP54-216ENST00000514901 ALG1Q9BT22 464 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 UPF3AQ9H1J1 476 aaKnown RBP16.32■□□□□ 0.2
NUP54-216ENST00000514901 PCDHA4Q9UN74 947 aa16.32■□□□□ 0.2
NUP54-216ENST00000514901 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.31■□□□□ 0.2
NUP54-216ENST00000514901 KBTBD13C9JR72 458 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 TXNP10599 105 aaKnown RBP16.31■□□□□ 0.2
NUP54-216ENST00000514901 MRPS9P82933 396 aaKnown RBP16.31■□□□□ 0.2
NUP54-216ENST00000514901 ST3GAL1Q11201 340 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 LRRC41Q15345 812 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 JAKMIP3Q5VZ66 844 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 CCDC62Q6P9F0 684 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 UBE2Q1Q7Z7E8 422 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 NLRX1Q86UT6 975 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 IL31RAQ8NI17 732 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 TMX3Q96JJ7 454 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 CDHR1Q96JP9 859 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 AIFM3Q96NN9 605 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 ANO3Q9BYT9 981 aa16.31■□□□□ 0.2
NUP54-216ENST00000514901 SYNRGQ9UMZ2 1314 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 MAFGO15525 162 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 DYNC1LI2O43237 492 aaPredicted RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 ZEB2O60315 1214 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 JAK2O60674 1132 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 ADAMTS4O75173 837 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 PGK1P00558 417 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 CST5P28325 142 aaPredicted RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 ICAM3P32942 547 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 SREBF1P36956 1147 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 TRIM29Q14134 588 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 BRDTQ58F21 947 aaPredicted RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 TLK2Q86UE8 772 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 BLIDQ8IZY5 108 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 PCSK9Q8NBP7 692 aaKnown RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 KLHDC9Q8NEP7 349 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 INPP4AQ96PE3 977 aaPredicted RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 PHF20Q9BVI0 1012 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 DDX41Q9UJV9 622 aaKnown RBP16.3■□□□□ 0.2
NUP54-216ENST00000514901 KIF3AQ9Y496 699 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 MRVI1Q9Y6F6 885 aa16.3■□□□□ 0.2
NUP54-216ENST00000514901 KIAA1217Q5T5P2 1943 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 ADCY6O43306 1168 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 RGS20O76081 388 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 CD2BP2O95400 341 aaKnown RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 C6orf222P0C671 652 aaPredicted RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 MNX1P50219 401 aaPredicted RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 GNASQ5JWF2 1037 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 GJC2Q5T442 439 aaPredicted RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 LENG1Q96BZ8 264 aaPredicted RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 GPRASP2Q96D09 838 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 PAWRQ96IZ0 340 aaKnown RBP16.29■□□□□ 0.2
NUP54-216ENST00000514901 C11orf49Q9H6J7 331 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 BRMS1Q9HCU9 246 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 TMEM260Q9NX78 707 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 RTEL1Q9NZ71 1219 aa16.29■□□□□ 0.2
NUP54-216ENST00000514901 MOXD2PA6NHM9 499 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 SPATA31C2B4DYI2 1134 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 FIBPO43427 364 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 GH1P01241 217 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
NUP54-216ENST00000514901 CYP3A4P08684 503 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 ARHGAP4P98171 946 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 LAMC2Q13753 1193 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 FSCN1Q16658 493 aaKnown RBP16.28■□□□□ 0.2
NUP54-216ENST00000514901 FAM184AQ8NB25 1140 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 OR6J1Q8NGC5 347 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 EMID1Q96A84 441 aaPredicted RBP16.28■□□□□ 0.2
NUP54-216ENST00000514901 SENP7Q9BQF6 1050 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 JADE2Q9NQC1 790 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 KCNJ14Q9UNX9 436 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.28■□□□□ 0.2
NUP54-216ENST00000514901 UBIAD1Q9Y5Z9 338 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 LRRC37A2A6NM11 1700 aa16.28■□□□□ 0.2
NUP54-216ENST00000514901 M0R2N6 131 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 KPNA6O60684 536 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 ARIH2O95376 493 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 COL6A1P12109 1028 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 ZNF76P36508 570 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 CPT1AP50416 773 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 USP11P51784 963 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 NEDD9Q14511 834 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 NPY5RQ15761 445 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 KCNA10Q16322 511 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 LY6KQ17RY6 165 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 CEP55Q53EZ4 464 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms