RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 AP5M1Q9H0R1 490 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 PSTPIP2Q9H939 334 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 PDLIM7Q9NR12 457 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 BARHL2Q9NY43 387 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 SEC63Q9UGP8 760 aaKnown RBP11.2□□□□□ -0.62
RNF4-221ENST00000513643 CYP46A1Q9Y6A2 500 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 TRIM43BA6NCK2 446 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 hCG_1984214I3L0E3 225 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 STXBP3O00186 592 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 ARVCFO00192 962 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 KIAA0355O15063 1070 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 PRPF3O43395 683 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 STAM2O75886 525 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 CD4P01730 458 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 IFNAR1P17181 557 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 CLK2P49760 499 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 METAP2P50579 478 aaKnown RBP eCLIP11.19□□□□□ -0.62
RNF4-221ENST00000513643 PURAQ00577 322 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 SP2Q02086 613 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 FAAP100Q0VG06 881 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 SEMA3FQ13275 785 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 PFKFB3Q16875 520 aaPredicted RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 C8orf34Q49A92 452 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 HABP4Q5JVS0 413 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 PCNX4Q63HM2 1172 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 PPP1R18Q6NYC8 613 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 CXCL17Q6UXB2 119 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 ZNF713Q8N859 430 aaPredicted RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 TRIM43Q96BQ3 446 aaPredicted RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 GLT1D1Q96MS3 346 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 UPF3BQ9BZI7 483 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 STARD7Q9NQZ5 370 aa11.19□□□□□ -0.62
RNF4-221ENST00000513643 RBM27Q9P2N5 1060 aaKnown RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 ZMYND8Q9ULU4 1186 aaPredicted RBP11.19□□□□□ -0.62
RNF4-221ENST00000513643 A0A0U1RQG5 324 aaPredicted RBP11.18□□□□□ -0.62
RNF4-221ENST00000513643 A0A1W2PPC1 479 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 ESYT2A0FGR8 921 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 SPATA31C2B4DYI2 1134 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 EIF5BO60841 1220 aaKnown RBP11.18□□□□□ -0.62
RNF4-221ENST00000513643 MYCNP04198 464 aaPredicted RBP11.18□□□□□ -0.62
RNF4-221ENST00000513643 ITGB8P26012 769 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 MAGEA10P43363 369 aaPredicted RBP11.18□□□□□ -0.62
RNF4-221ENST00000513643 LY6KQ17RY6 165 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 MYSM1Q5VVJ2 828 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 KCNV1Q6PIU1 500 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 CHRDL2Q6WN34 429 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 SEPT14Q6ZU15 432 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 NOL8Q76FK4 1167 aaKnown RBP11.18□□□□□ -0.62
RNF4-221ENST00000513643 SH3RF1Q7Z6J0 888 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 FCHSD1Q86WN1 690 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 FAM126BQ8IXS8 530 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 CRYGNQ8WXF5 182 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 GPKOWQ92917 476 aaPredicted RBP eCLIP11.18□□□□□ -0.62
RNF4-221ENST00000513643 RIC8AQ9NPQ8 531 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 TBX21Q9UL17 535 aa11.18□□□□□ -0.62
RNF4-221ENST00000513643 ZEB2O60315 1214 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 KPNA6O60684 536 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 GH1P01241 217 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 SYN1P17600 705 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 CCND2P30279 289 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 CPT1AP50416 773 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 FGD1P98174 961 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 ITGA7Q13683 1181 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 CELF3Q5SZQ8 465 aaKnown RBP11.17□□□□□ -0.62
RNF4-221ENST00000513643 OR6J1Q8NGC5 347 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 KAT2BQ92831 832 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 SENP7Q9BQF6 1050 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 RNF26Q9BY78 433 aaPredicted RBP11.17□□□□□ -0.62
RNF4-221ENST00000513643 ZMYND12Q9H0C1 365 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 PDRG1Q9NUG6 133 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 ATP11BQ9Y2G3 1177 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 SCN10AQ9Y5Y9 1956 aa11.17□□□□□ -0.62
RNF4-221ENST00000513643 ADAMTS3O15072 1205 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 MMP3P08254 477 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 CLTBP09497 229 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 MYCLP12524 364 aaPredicted RBP11.16□□□□□ -0.62
RNF4-221ENST00000513643 SCG2P13521 617 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 ITGB5P18084 799 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 LAMC2Q13753 1193 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 HEATR3Q7Z4Q2 680 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 SESTD1Q86VW0 696 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 PPTC7Q8NI37 304 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 SMARCC2Q8TAQ2 1214 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 AFG1LQ8WV93 481 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 CUL5Q93034 780 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 KIF2CQ99661 725 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 MTG1Q9BT17 334 aaPredicted RBP11.16□□□□□ -0.62
RNF4-221ENST00000513643 GLT8D2Q9H1C3 349 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 BCAS3Q9H6U6 928 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 NCOA5Q9HCD5 579 aaKnown RBP11.16□□□□□ -0.62
RNF4-221ENST00000513643 POLR3EQ9NVU0 708 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 PCDH10Q9P2E7 1040 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 TPCN1Q9ULQ1 816 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 PCDHA6Q9UN73 950 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 PCDHA8Q9Y5H6 950 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 UBIAD1Q9Y5Z9 338 aa11.16□□□□□ -0.62
RNF4-221ENST00000513643 KIAA1217Q5T5P2 1943 aa11.15□□□□□ -0.62
RNF4-221ENST00000513643 MROH7Q68CQ1 1323 aa11.15□□□□□ -0.62
RNF4-221ENST00000513643 SMCO2A6NFE2 343 aa11.15□□□□□ -0.62
RNF4-221ENST00000513643 HAS3O00219 553 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms