RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 FGFR1P11362 822 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 ARL4AP40617 200 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 CYP4F8P98187 520 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 SF1Q15637 639 aaKnown RBP5.62□□□□□ -1.51
NUP54-212ENST00000513248 NFE2L2Q16236 605 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 SKOR2Q2VWA4 1001 aaPredicted RBP5.62□□□□□ -1.51
NUP54-212ENST00000513248 SLC35F1Q5T1Q4 408 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 SP8Q8IXZ3 490 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 LRRC47Q8N1G4 583 aaKnown RBP5.62□□□□□ -1.51
NUP54-212ENST00000513248 ZBTB38Q8NAP3 1195 aaPredicted RBP5.62□□□□□ -1.51
NUP54-212ENST00000513248 FRS2Q8WU20 508 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 OSBP2Q969R2 916 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 PPP1R14AQ96A00 147 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 CCDC140Q96MF4 163 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 SRPK1Q96SB4 655 aaKnown RBP5.62□□□□□ -1.51
NUP54-212ENST00000513248 DNAJC7Q99615 494 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 NPFFR2Q9Y5X5 522 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 KIAA0586Q9BVV6 1533 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 ERCC6L2Q5T890 1561 aa5.62□□□□□ -1.51
NUP54-212ENST00000513248 A0A1W2PQ27 194 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 A0A1W2PQ64 194 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 A0A1W2PQC6 194 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 A0A1W2PQD8 194 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 C2orf71A6NGG8 1288 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 DLX3O60479 287 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 TBC1D8O95759 1140 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 CELA3BP08861 270 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 SDHBP21912 280 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 SEPHS1P49903 392 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 ERVFRD-1P60508 538 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 MVKQ03426 396 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 MAP4K2Q12851 820 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 MTERF2Q49AM1 385 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 FOXB2Q5VYV0 432 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 NLGN2Q8NFZ4 835 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 PANK1Q8TE04 598 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 KISS1RQ969F8 398 aaPredicted RBP5.61□□□□□ -1.51
NUP54-212ENST00000513248 ZSWIM4Q9H7M6 989 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 TNFRSF12AQ9NP84 129 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 USP35Q9P2H5 1018 aa5.61□□□□□ -1.51
NUP54-212ENST00000513248 RUSC2Q8N2Y8 1516 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 RAPGEF2Q9Y4G8 1499 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 PTPRGP23470 1445 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 OTOL1A6NHN0 477 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 MPOP05164 745 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 FAM153BP0C7A2 387 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 MSL3P1P0C860 447 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 VIPR1P32241 457 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 KRTAP10-2P60368 255 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 HSP90AA2PQ14568 343 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 BMS1Q14692 1282 aaKnown RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 ACBD5Q5T8D3 534 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 YOD1Q5VVQ6 348 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 PRRT2Q7Z6L0 340 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 TEPSINQ96N21 525 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 MMP19Q99542 508 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 AARSD1Q9BTE6 412 aaKnown RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 CNTD2Q9H8S5 307 aa5.6□□□□□ -1.51
NUP54-212ENST00000513248 EPB41L4AQ9HCS5 686 aaPredicted RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 LUC7LQ9NQ29 371 aaKnown RBP5.6□□□□□ -1.51
NUP54-212ENST00000513248 AGRPO00253 132 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 THBDP07204 575 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 ADRB1P08588 477 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 PAMP19021 973 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 L1CAMP32004 1257 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 EPHB3P54753 998 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 CORO7P57737 925 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 NFKB2Q00653 900 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 SSRP1Q08945 709 aaKnown RBP5.59□□□□□ -1.51
NUP54-212ENST00000513248 SCRN1Q12765 414 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 NTRK3Q16288 839 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 C2orf27AQ580R0 203 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 MBLAC2Q68D91 279 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 CCDC103Q8IW40 242 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 TMEM145Q8NBT3 493 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 THAP3Q8WTV1 239 aaPredicted RBP5.59□□□□□ -1.51
NUP54-212ENST00000513248 EXOC2Q96KP1 924 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 RNPC3Q96LT9 517 aaKnown RBP5.59□□□□□ -1.51
NUP54-212ENST00000513248 KANSL2Q9H9L4 492 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 GPRC5CQ9NQ84 441 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 LRP2BPQ9P2M1 347 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 PFDN2Q9UHV9 154 aa5.59□□□□□ -1.51
NUP54-212ENST00000513248 TMEFF2Q9UIK5 374 aaPredicted RBP5.59□□□□□ -1.51
NUP54-212ENST00000513248 SHROOM2Q13796 1616 aa5.59□□□□□ -1.52
NUP54-212ENST00000513248 TNIKQ9UKE5 1360 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 KDM2BQ8NHM5 1336 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 CCDC85CA6NKD9 419 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 NUDT19A8MXV4 375 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 PPP1R11O60927 126 aaPredicted RBP5.58□□□□□ -1.52
NUP54-212ENST00000513248 CPP00450 1065 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 PABPC1P11940 636 aaKnown RBP5.58□□□□□ -1.52
NUP54-212ENST00000513248 TMEM62Q0P6H9 643 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 SQSTM1Q13501 440 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 RAB3GAP1Q15042 981 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 ZC3H12BQ5HYM0 836 aaKnown RBP5.58□□□□□ -1.52
NUP54-212ENST00000513248 NOP9Q86U38 636 aaKnown RBP5.58□□□□□ -1.52
NUP54-212ENST00000513248 MZB1Q8WU39 189 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 PDLIM7Q9NR12 457 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 TBX22Q9Y458 520 aa5.58□□□□□ -1.52
NUP54-212ENST00000513248 TRBV23OR9-2A0A075B6M9 112 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms