RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 DDX41Q9UJV9 622 aaKnown RBP13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 FRMPD4Q14CM0 1322 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 GOLGA8AA7E2F4 631 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 GOLGA8BA8MQT2 603 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 PIK3CDO00329 1044 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 CASTP20810 708 aaKnown RBP13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 PSMA5P28066 241 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 PSMC6P62333 389 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 PURAQ00577 322 aaKnown RBP13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 ARHGAP1Q07960 439 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 APOBRQ0VD83 1088 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 USP17L6PQ6QN14 398 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 FAM126BQ8IXS8 530 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 BADQ92934 168 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 BRF1Q92994 677 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 TMEM39AQ9NV64 488 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 POLR3EQ9NVU0 708 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 TBX21Q9UL17 535 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 MROH7Q68CQ1 1323 aa13.4□□□□□ -0.26
SH3RF1-205ENST00000511421 LAMA3Q16787 3333 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 GH1P01241 217 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 CD4P01730 458 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 CCND2P30279 289 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 FGD1P98174 961 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 ITGA7Q13683 1181 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 TDHQ8IZJ6 230 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 ZFP91Q96JP5 570 aaPredicted RBP13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 ZSWIM6Q9HCJ5 1215 aa13.39□□□□□ -0.27
SH3RF1-205ENST00000511421 MYL3P08590 195 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 ADD1P35611 737 aaKnown RBP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 MRPS9P82933 396 aaKnown RBP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 BRDTQ58F21 947 aaPredicted RBP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 SMARCC2Q8TAQ2 1214 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 AFG1LQ8WV93 481 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 GPKOWQ92917 476 aaPredicted RBP eCLIP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 CUL5Q93034 780 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 MTG1Q9BT17 334 aaPredicted RBP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 SEZ6LQ9BYH1 1024 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 PSTPIP2Q9H939 334 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 MRVI1Q9Y6F6 885 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 LTBP2Q14767 1821 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 NID2Q14112 1375 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 KIAA1217Q5T5P2 1943 aa13.38□□□□□ -0.27
SH3RF1-205ENST00000511421 SOX1O00570 391 aaPredicted RBP13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 KPNA6O60684 536 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 METAP2P50579 478 aaKnown RBP eCLIP13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 EVCP57679 992 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 WWC2Q6AWC2 1192 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 TYW1BQ6NUM6 668 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 RUFY3Q7L099 469 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 HEATR3Q7Z4Q2 680 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 EMID1Q96A84 441 aaPredicted RBP13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 TM6SF1Q9BZW5 370 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 NAP1L2Q9ULW6 460 aaPredicted RBP13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 MMP3P08254 477 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 RAG1P15918 1043 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 SP2Q02086 613 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 KCNV1Q6PIU1 500 aa13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 INPP4AQ96PE3 977 aaPredicted RBP13.37□□□□□ -0.27
SH3RF1-205ENST00000511421 SCN10AQ9Y5Y9 1956 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 CCDC196A0A1B0GTZ2 297 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 TLR3O15455 904 aaKnown RBP13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 B4GALT4O60513 344 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 STAM2O75886 525 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 TIMP1P01033 207 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 TGFB3P10600 412 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 ICAM3P32942 547 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 LAMC2Q13753 1193 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 TOB2Q14106 344 aaPredicted RBP13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 UBE2SQ16763 222 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 LRIT3Q3SXY7 679 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 MYSM1Q5VVJ2 828 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 PCNX4Q63HM2 1172 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 TRPV6Q9H1D0 765 aa13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 ALDH8A1Q9H2A2 487 aaPredicted RBP13.36□□□□□ -0.27
SH3RF1-205ENST00000511421 SZT2Q5T011 3432 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 STXBP3O00186 592 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 HOXD8P13378 290 aaPredicted RBP13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 UBA1P22314 1058 aaKnown RBP13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 PDIA3P30101 505 aaKnown RBP13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 EPHB4P54760 987 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 SEMA3FQ13275 785 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 NTRK3Q16288 839 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 NBPF20Q3BBV1 942 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 CELF3Q5SZQ8 465 aaKnown RBP13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 XRRA1Q6P2D8 792 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 DHX37Q8IY37 1157 aaKnown RBP13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 PPTC7Q8NI37 304 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 KAT2BQ92831 832 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 BARHL2Q9NY43 387 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 RTEL1Q9NZ71 1219 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 CYP46A1Q9Y6A2 500 aa13.35□□□□□ -0.27
SH3RF1-205ENST00000511421 SPATA31C2B4DYI2 1134 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 hCG_1984214I3L0E3 225 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 GGPS1O95749 300 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 NAPAP54920 295 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 SHHQ15465 462 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 GNPTABQ3T906 1256 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 C9orf50Q5SZB4 431 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms