RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	CSPP1	Q1MSJ5	1256 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CCDC178	Q5BJE1	867 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	VPS53	Q5VIR6	699 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SP7	Q8TDD2	431 aa	Predicted RBP	10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	WNT8B	Q93098	351 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MTG1	Q9BT17	334 aa	Predicted RBP	10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	POLR3E	Q9NVU0	708 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PPP4R2	Q9NY27	417 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MTMR4	Q9NYA4	1195 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CLIP2	Q9UDT6	1046 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FRYL	O94915	3013 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249		A6NJR5	290 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TSPY2	A6NKD2	308 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ZNF213	O14771	459 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TTLL1	O95922	423 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MYL3	P08590	195 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CHML	P26374	656 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SNAP25	P60880	206 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	IMMT	Q16891	758 aa	Known RBP	10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CASC1	Q6TDU7	716 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	KIAA1211	Q6ZU35	1233 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ADHFE1	Q8IWW8	467 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	AFAP1L1	Q8TED9	768 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	STAG1	Q8WVM7	1258 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	COPS5	Q92905	334 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TRERF1	Q96PN7	1200 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	RAD9A	Q99638	391 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	8e-9	■□□□□ 8.1
UBE2D3-223	ENST00000508249	MUTYH	Q9UIF7	546 aa		10.8	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TMEM232	C9JQI7	657 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ST18	O60284	1047 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ARIH2	O95376	493 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	BMP3	P12645	472 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ALAS1	P13196	640 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	EDNRB	P24530	442 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	KCNJ6	P48051	423 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CPT1A	P50416	773 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ALDH5A1	P51649	535 aa	Predicted RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	STAT2	P52630	851 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	HTRA4	P83105	476 aa	Predicted RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TFAP4	Q01664	338 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PTPN11	Q06124	597 aa	Predicted RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TRIM71	Q2Q1W2	868 aa	Known RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FAM47C	Q5HY64	1035 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	GDF6	Q6KF10	455 aa	Predicted RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CNKSR3	Q6P9H4	555 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MFSD6	Q6ZSS7	791 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	STK11IP	Q8N1F8	1099 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	OR6J1	Q8NGC5	347 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PABPC5	Q96DU9	382 aa	Known RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MRPL38	Q96DV4	380 aa	Known RBP	10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	WDR11	Q9BZH6	1224 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CNNM2	Q9H8M5	875 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TCP11L1	Q9NUJ3	509 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PRKAG3	Q9UGI9	489 aa		10.79	□□□□□ -0.68
UBE2D3-223	ENST00000508249	NFIB	O00712	420 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SGSM2	O43147	1006 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PRDM1	O75626	825 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	LINC00271	P0C7V0	271 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FDX1	P10109	184 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	DLX2	Q07687	328 aa	Predicted RBP	10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	BFSP2	Q13515	415 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CTC1	Q2NKJ3	1217 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TKFC	Q3LXA3	575 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	PUS10	Q3MIT2	529 aa	Known RBP	10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TCEAL5	Q5H9L2	206 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SLFN13	Q68D06	897 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SLC30A10	Q6XR72	485 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.78	□□□□□ -0.68	4e-6	■■■□□ 19.2
UBE2D3-223	ENST00000508249	LRRC8D	Q7L1W4	858 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SESTD1	Q86VW0	696 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CAGE1	Q8TC20	777 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ESR2	Q92731	530 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	KAT2B	Q92831	832 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	GMCL1	Q96IK5	515 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249		U3KPZ7	1027 aa	Predicted RBP	10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MYH7B	A7E2Y1	1941 aa		10.78	□□□□□ -0.68
UBE2D3-223	ENST00000508249	RANBP6	O60518	1105 aa	Known RBP	10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	PLA2G6	O60733	806 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	LGR5	O75473	907 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	CKB	P12277	381 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	SELP	P16109	830 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	NOV	P48745	357 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	CTDSPL2	Q05D32	466 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	HIC1	Q14526	733 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	SMAD2	Q15796	467 aa	Known RBP	10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	PTGIS	Q16647	500 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	EPC2	Q52LR7	807 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	BMP8A	Q7Z5Y6	402 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	RETREG2	Q8NC44	543 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	FBXO22	Q8NEZ5	403 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	TTC14	Q96N46	770 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	KRT23	Q9C075	422 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	TOMM22	Q9NS69	142 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	PRR12	Q9ULL5	1215 aa		10.77	□□□□□ -0.69
UBE2D3-223	ENST00000508249	ZNF292	O60281	2723 aa		10.76	□□□□□ -0.69
UBE2D3-223	ENST00000508249	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.76	□□□□□ -0.69
UBE2D3-223	ENST00000508249	TBX10	O75333	385 aa		10.76	□□□□□ -0.69
UBE2D3-223	ENST00000508249	TRDN	Q13061	729 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms