RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 LZTR1Q8N653 840 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 IGSF22Q8N9C0 903 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 USP33Q8TEY7 942 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 TRMT2BQ96GJ1 504 aaKnown RBP5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 WNK4Q96J92 1243 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 MTFR1LQ9H019 292 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 CDIP1Q9H305 208 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 IPPKQ9H8X2 491 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 MBNL3Q9NUK0 354 aaKnown RBP5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 IMPACTQ9P2X3 320 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 PPARGC1AQ9UBK2 798 aaKnown RBP5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 ADGRE2Q9UHX3 823 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 ADAMTS6Q9UKP5 1117 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 RWDD3Q9Y3V2 267 aa5.71□□□□□ -1.5
HMGB1P28-201ENST00000507778 A0A1W2PQJ5 194 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 C22orf46C9J442 243 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 HPXP02790 462 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 CKMP06732 381 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 RNASE1P07998 156 aaKnown RBP5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 RAC2P15153 192 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 PRKCAP17252 672 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 NFKB2Q00653 900 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 MVKQ03426 396 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 LRP8Q14114 963 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 NR0B2Q15466 257 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 C16orf59Q7L2K0 433 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 NLRP10Q86W26 655 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 TEX2Q8IWB9 1127 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 NUP43Q8NFH3 380 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 PANK1Q8TE04 598 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 KCNJ15Q99712 375 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 MTA3Q9BTC8 594 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 JAM3Q9BX67 310 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 CELF4Q9BZC1 486 aaKnown RBP5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 PDLIM7Q9NR12 457 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 CATSPERZQ9NTU4 200 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 C19orf73Q9NVV2 129 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 ACSL6Q9UKU0 697 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 COA3Q9Y2R0 106 aaPredicted RBP5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 COQ6Q9Y2Z9 468 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 X6R8D5 127 aa5.7□□□□□ -1.5
HMGB1P28-201ENST00000507778 CCDC66A2RUB6 948 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 NOTOA8MTQ0 251 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 HYAL3O43820 417 aaPredicted RBP5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 PYGMP11217 842 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 FPR2P25090 351 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 DNM2P50570 870 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 ERVFC1P60507 584 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 CYP4F8P98187 520 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 ZNF792Q3KQV3 632 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 PKN3Q6P5Z2 889 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 ANKLE2Q86XL3 938 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 KIF18BQ86Y91 864 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 LILRA2Q8N149 483 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 Q8N1Y9 231 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 PLEKHO2Q8TD55 490 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 MYLIPQ8WY64 445 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 PLCD4Q9BRC7 762 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 C19orf44Q9H6X5 657 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 SP110Q9HB58 689 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 CTNND2Q9UQB3 1225 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 ATP8A1Q9Y2Q0 1164 aa5.69□□□□□ -1.5
HMGB1P28-201ENST00000507778 M0R2C6 588 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 PSPNO60542 156 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 DGKIO75912 1065 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 GLRX3O76003 335 aaKnown RBP5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 MSL3P1P0C860 447 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 GNAT1P11488 350 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 CPEP16870 476 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 TACR1P25103 407 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 TRHRP34981 398 aaPredicted RBP5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 SCNN1BP51168 640 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 SPIRE1Q08AE8 756 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 KIR3DS1Q14943 382 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 SNX17Q15036 470 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 CRY1Q16526 586 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 MROH9Q5TGP6 573 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 AFAP1L2Q8N4X5 818 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 ORAI3Q9BRQ5 295 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 EPB41L1Q9H4G0 881 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 CABP5Q9NP86 173 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 GPR160Q9UJ42 338 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 MCM8Q9UJA3 840 aa5.68□□□□□ -1.5
HMGB1P28-201ENST00000507778 CBX4O00257 560 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 POU3F3P20264 500 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 ARL4AP40617 200 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 STRN3Q13033 797 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 DHCR24Q15392 516 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 SEPT7Q16181 437 aaKnown RBP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 TMEM177Q53S58 311 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 BICRALQ6AI39 1079 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 WWC2Q6AWC2 1192 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 OVCH1Q7RTY7 1134 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 STRA8Q7Z7C7 330 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 NLRX1Q86UT6 975 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 CABP7Q86V35 215 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 DDX42Q86XP3 938 aaKnown RBP eCLIP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 RIOX2Q8IUF8 465 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 OR2W6PQ8NHA6 318 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms