RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 USP6NLQ92738 828 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 FGD4Q96M96 766 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 GBP4Q96PP9 640 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 RMDN3Q96TC7 470 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 PDCD2LQ9BRP1 358 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 SCAND2PQ9GZW5 306 aaPredicted RBP8.19□□□□□ -1.1
NUP54-204ENST00000506098 TFIP11Q9UBB9 837 aaKnown RBP8.19□□□□□ -1.1
NUP54-204ENST00000506098 ADD3Q9UEY8 706 aaKnown RBP8.19□□□□□ -1.1
NUP54-204ENST00000506098 CEP131Q9UPN4 1083 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 CLIC4Q9Y696 253 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 IVNS1ABPQ9Y6Y0 642 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 ASTN1O14525 1302 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 ELP1O95163 1332 aa8.19□□□□□ -1.1
NUP54-204ENST00000506098 IGLV3-22A0A075B6J6 115 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 SOWAHBA6NEL2 793 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 B4DLN1 442 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 MEIS1O00470 390 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 TBX3O15119 743 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 CCNT1O60563 726 aaKnown RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 COBLO75128 1261 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 PPP6R2O75170 966 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 IGHA2P01877 340 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 NR3C2P08235 984 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 HOXC6P09630 235 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 ADORA2AP29274 412 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 CTGFP29279 349 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 PRPHP41219 470 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 MRPS9P82933 396 aaKnown RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 LACTBP83111 547 aaPredicted RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 ATP2C1P98194 919 aaPredicted RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 SP3Q02447 781 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 MAP2K5Q13163 448 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 NBR1Q14596 966 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 LETM2Q2VYF4 491 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 ARHGEF16Q5VV41 709 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 ARL6IP4Q66PJ3 421 aaKnown RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 MAMDC4Q6UXC1 1216 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 CCAR1Q8IX12 1150 aaKnown RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 LEO1Q8WVC0 666 aaPredicted RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 LENG9Q96B70 501 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 CHAMP1Q96JM3 812 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 PURBQ96QR8 312 aaKnown RBP8.18□□□□□ -1.1
NUP54-204ENST00000506098 GJD2Q9UKL4 321 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 CNPY2Q9Y2B0 182 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 UBIAD1Q9Y5Z9 338 aa8.18□□□□□ -1.1
NUP54-204ENST00000506098 ASB14A6NK59 587 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 FAM86B1E9PN63 330 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 GPR25O00155 361 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 SPTLC2O15270 562 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 MAFGO15525 162 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 NEMFO60524 1076 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 TDP2O95551 362 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 PGK2P07205 417 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 FAM86B2P0C5J1 330 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 EIF2AK2P19525 551 aaKnown RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 CCND2P30279 289 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 MCM7P33993 719 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 PTGDRQ13258 359 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 IRF5Q13568 498 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 ZNF174Q15697 407 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 STXBP2Q15833 593 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 CSPP1Q1MSJ5 1256 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 FOXD4L6Q3SYB3 417 aaPredicted RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 CEP55Q53EZ4 464 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 WDR78Q5VTH9 848 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 FOXD4L3Q6VB84 417 aaPredicted RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 MSL3Q8N5Y2 521 aaKnown RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 IL31RAQ8NI17 732 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 KCNG4Q8TDN1 519 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 SOCS4Q8WXH5 440 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 MAML3Q96JK9 1138 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 SPATA32Q96LK8 384 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 NAP1L5Q96NT1 182 aaPredicted RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 INPP4AQ96PE3 977 aaPredicted RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 MTMR9Q96QG7 549 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 MPHOSPH6Q99547 160 aaKnown RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 NUDT12Q9BQG2 462 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 MXRA8Q9BRK3 442 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 FTOQ9C0B1 505 aaKnown RBP eCLIP8.17□□□□□ -1.1
NUP54-204ENST00000506098 TMEM60Q9H2L4 133 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 KCNMB3Q9NPA1 279 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 JADE2Q9NQC1 790 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 WBP1LQ9NX94 342 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 SLC5A4Q9NY91 659 aa8.17□□□□□ -1.1
NUP54-204ENST00000506098 DDX25Q9UHL0 483 aaKnown RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 SRPRBQ9Y5M8 271 aaKnown RBP8.17□□□□□ -1.1
NUP54-204ENST00000506098 TNPO2O14787 897 aaKnown RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 SLC37A4O43826 429 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 EIF3JO75822 258 aaKnown RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 RGS20O76081 388 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 GNRH1P01148 92 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 XRCC5P13010 732 aaKnown RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 ITGB5P18084 799 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 NCLP19338 710 aaKnown RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 ATP2B1P20020 1258 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 ICAM3P32942 547 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 MCM4P33991 863 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 ZNF76P36508 570 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 PSMC4P43686 418 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 FCGRTP55899 365 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms