RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ADAMTS3O15072 1205 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 STX6O43752 255 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 EIF3JO75822 258 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 SNAI1O95863 264 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 ATP2B1P20020 1258 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 SYT1P21579 422 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 ARHGAP4P98171 946 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 CACNB2Q08289 660 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 TRIM32Q13049 653 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 NR5A1Q13285 461 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 ACVR2BQ13705 512 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 INF2Q27J81 1249 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 GNPTABQ3T906 1256 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 PCNX4Q63HM2 1172 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 XRRA1Q6P2D8 792 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 NLRX1Q86UT6 975 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 FBXO16Q8IX29 292 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 FGD4Q96M96 766 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 FOXP1Q9H334 677 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 ABHD16BQ9H3Z7 469 aa9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 HMX1Q9NP08 348 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-206ENST00000505705 ASTN1O14525 1302 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 ZNFX1Q9P2E3 1918 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 M0R2N6 131 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 MARCH6O60337 910 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 CCNT1O60563 726 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 STAM2O75886 525 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 PDIA4P13667 645 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 SREBF1P36956 1147 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 NPY5RQ15761 445 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 LETM2Q2VYF4 491 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 FOXD4L5Q5VV16 416 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 NEK8Q86SG6 692 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 VSIG10LQ86VR7 867 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 NOSTRINQ8IVI9 506 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 FOXD4L4Q8WXT5 416 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 NAP1L4Q99733 375 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 RNF208Q9H0X6 261 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 VTA1Q9NP79 307 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 FAM184BQ9ULE4 1060 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 NOL7Q9UMY1 257 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 MRVI1Q9Y6F6 885 aa9.35□□□□□ -0.91
LIMCH1-206ENST00000505705 RPTORQ8N122 1335 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 ZNF236Q9UL36 1845 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 TXNP10599 105 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 AKR1A1P14550 325 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 EDNRBP24530 442 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 CCND3P30281 292 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 USP11P51784 963 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 CLCN6P51797 869 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 MTMR1Q13613 665 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 TTLL4Q14679 1199 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 COL13A1Q5TAT6 717 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 KCNV1Q6PIU1 500 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 IL31RAQ8NI17 732 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 MORC4Q8TE76 937 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 MXRA8Q9BRK3 442 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 TMEM106CQ9BVX2 250 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 WDR11Q9BZH6 1224 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 PDGFCQ9NRA1 345 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 NRBP1Q9UHY1 535 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 RBBP6Q7Z6E9 1792 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 DOCK3Q8IZD9 2030 aa9.34□□□□□ -0.91
LIMCH1-206ENST00000505705 FRMPD4Q14CM0 1322 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 KIF28PB7ZC32 967 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 SEPT4O43236 478 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CYP3A4P08684 503 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 ZNF865P0CJ78 1059 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 RARBP10826 455 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CYBAP13498 195 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CCL5P13501 91 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 ADCYAP1R1P41586 468 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 MRPS9P82933 396 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 TNFAIP2Q03169 654 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 MTFR1Q15390 333 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 LY6KQ17RY6 165 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CCDC144BQ3MJ40 725 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CEP55Q53EZ4 464 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 PRR16Q569H4 304 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 EARS2Q5JPH6 523 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 ANO1Q5XXA6 986 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 IQSEC1Q6DN90 963 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 FERMT3Q86UX7 667 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 PLA2G4DQ86XP0 818 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 SCFD2Q8WU76 684 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 CDHR1Q96JP9 859 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 UNC93B1Q9H1C4 597 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 ZSCAN16Q9H4T2 348 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 MLXIPQ9HAP2 919 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 SPC25Q9HBM1 224 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 JADE2Q9NQC1 790 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 PKD2L1Q9P0L9 805 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 PLXNA1Q9UIW2 1896 aa9.33□□□□□ -0.92
LIMCH1-206ENST00000505705 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 FAM205CA6NFA0 338 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 NKRFO15226 690 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 MAFGO15525 162 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 DYNC1LI2O43237 492 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 FIBPO43427 364 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 SORBS3O60504 671 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms