RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 NAPAP54920 295 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 GALNT17Q6IS24 598 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 KCNK18Q7Z418 384 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 TBCKQ8TEA7 893 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 CAVIN3Q969G5 261 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 ZNF233A6NK53 670 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 ATP1A2P50993 1020 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 DNA2P51530 1060 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 DIXDC1Q155Q3 683 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 MAN2A1Q16706 1144 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 CCDC70Q6NSX1 233 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 USP17L2Q6R6M4 530 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 MKNK2Q9HBH9 465 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 BIN2Q9UBW5 565 aaPredicted RBP13.17□□□□□ -0.3
UBE3D-206ENST00000505226 NFU1Q9UMS0 254 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 NOL4O94818 638 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 NONOQ15233 471 aaKnown RBP eCLIP13.17□□□□□ -0.3
UBE3D-206ENST00000505226 CCDC181Q5TID7 509 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 EMBQ6PCB8 327 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 IQCKQ8N0W5 287 aa13.17□□□□□ -0.3
UBE3D-206ENST00000505226 EBAG9O00559 213 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 SKOR1P84550 965 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 C8orf74Q6P047 294 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 PDXDC1Q6P996 788 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 NEK8Q86SG6 692 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 KANSL2Q9H9L4 492 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 VAT1LQ9HCJ6 419 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 NLRC4Q9NPP4 1024 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 PACSIN2Q9UNF0 486 aaPredicted RBP13.16□□□□□ -0.3
UBE3D-206ENST00000505226 SLC37A4O43826 429 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 RASA1P20936 1047 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 GNAQP50148 359 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 RPS8P62241 208 aaKnown RBP13.16□□□□□ -0.3
UBE3D-206ENST00000505226 ALS2CLQ60I27 953 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 CCDC47Q96A33 483 aaKnown RBP13.16□□□□□ -0.3
UBE3D-206ENST00000505226 MTMR9Q96QG7 549 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 GDF3Q9NR23 364 aa13.16□□□□□ -0.3
UBE3D-206ENST00000505226 SAP30BPQ9UHR5 308 aaKnown RBP13.16□□□□□ -0.3
UBE3D-206ENST00000505226 POTEMA6NI47 508 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 TNFRSF8P28908 595 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 GTF2A1P52655 376 aaPredicted RBP13.15□□□□□ -0.3
UBE3D-206ENST00000505226 ECM1Q16610 540 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 FBXW10Q5XX13 1052 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 SV2BQ7L1I2 683 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 ALS2CR12Q96Q35 445 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 FGFBP2Q9BYJ0 223 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 IRS2Q9Y4H2 1338 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 OPA1O60313 960 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 FTCDO95954 541 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 RNASE9P60153 205 aaKnown RBP13.15□□□□□ -0.3
UBE3D-206ENST00000505226 AMPD3Q01432 767 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 NNTQ13423 1086 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 GBP6Q6ZN66 633 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 UNC13DQ70J99 1090 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 KRT25Q7Z3Z0 450 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 DZIP1Q86YF9 867 aaKnown RBP13.15□□□□□ -0.3
UBE3D-206ENST00000505226 TGFBRAP1Q8WUH2 860 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 RUBCNQ92622 972 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 GJA10Q969M2 543 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 RNPC3Q96LT9 517 aaKnown RBP13.15□□□□□ -0.3
UBE3D-206ENST00000505226 CCDC43Q96MW1 224 aaKnown RBP13.15□□□□□ -0.3
UBE3D-206ENST00000505226 EPB41L5Q9HCM4 733 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 PALMO75781 387 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 ERLIN2O94905 339 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 GUCY2DQ02846 1103 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 EHHADHQ08426 723 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 TBC1D9BQ66K14 1250 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 KCNV1Q6PIU1 500 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 IFT81Q8WYA0 676 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 PIGSQ96S52 555 aa13.15□□□□□ -0.3
UBE3D-206ENST00000505226 HSF2BPO75031 334 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 TDP2O95551 362 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 KLRC1P26715 233 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 GUCY2FP51841 1108 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 GUCY1A3Q02108 690 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 CCDC84Q86UT8 332 aaPredicted RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 GUF1Q8N442 669 aaKnown RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 NOX5Q96PH1 765 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 PACSIN1Q9BY11 444 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 UBA5Q9GZZ9 404 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 ZNF335Q9H4Z2 1342 aaPredicted RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 RBAK-RBAKDNI3L0D1 243 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 KCNQ2O43526 872 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 PAFAH1B1P43034 410 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 MARCH10Q8NA82 808 aaPredicted RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 CASKIN2Q8WXE0 1202 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 LARP4BQ92615 738 aaKnown RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 DDX12PQ92771 950 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 CALML4Q96GE6 196 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 SPZ1Q9BXG8 430 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 ROBO3Q96MS0 1386 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 CCDC88AQ3V6T2 1871 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 HEXIM1O94992 359 aaKnown RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 PPP1R2P41236 205 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 NAP1L1P55209 391 aaKnown RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 MAPKAPK5Q8IW41 473 aa13.14□□□□□ -0.31
UBE3D-206ENST00000505226 ZNF444Q8N0Y2 327 aaPredicted RBP13.14□□□□□ -0.31
UBE3D-206ENST00000505226 IQCDQ96DY2 449 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms