RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GPR161Q8N6U8 529 aaKnown RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 TTLL6Q8N841 843 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 GMCL1Q96IK5 515 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 PNMA5Q96PV4 448 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ERGIC2Q96RQ1 377 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 CARD6Q9BX69 1037 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 DBNDD1Q9H9R9 158 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 LZTFL1Q9NQ48 299 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 BLOC1S4Q9NUP1 217 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 USP17L10C9JJH3 530 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ATP8B1O43520 1251 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 FOSP01100 380 aaPredicted RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 TRIM21P19474 475 aaKnown RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 PMS1P54277 932 aaKnown RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 ERVK-24P63145 666 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ZBED6P86452 979 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ICA1Q05084 483 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 NFIAQ12857 509 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 BMS1Q14692 1282 aaKnown RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 CDC37Q16543 378 aaPredicted RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 HAUS3Q68CZ6 603 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ANKRD40Q6AI12 368 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 CCDC170Q8IYT3 715 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 KRT222Q8N1A0 295 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 LRRC15Q8TF66 581 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 RABGGTAQ92696 567 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 NOC4LQ9BVI4 516 aaKnown RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 MXD3Q9BW11 206 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 HAUS4Q9H6D7 363 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 PCDHA12Q9UN75 941 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 SCN9AQ15858 1988 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 CYP3A7-CYP3A51PA0A087WV96 503 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 TTC26A0AVF1 554 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 MYMKA6NI61 221 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 TBX3O15119 743 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 PPP1R11O60927 126 aaPredicted RBP13.34□□□□□ -0.27
NUP54-202ENST00000502850 COBLO75128 1261 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 NDUFA10O95299 355 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 EEF2P13639 858 aaKnown RBP13.34□□□□□ -0.27
NUP54-202ENST00000502850 CYP3A7P24462 503 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 CDK17Q00537 523 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 TBC1D8BQ0IIM8 1120 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 MEA1Q16626 185 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 UBE2SQ16763 222 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 QRICH1Q2TAL8 776 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 TTBK2Q6IQ55 1244 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 TMCO3Q6UWJ1 677 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 KCTD1Q719H9 257 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 CCDC84Q86UT8 332 aaPredicted RBP13.34□□□□□ -0.27
NUP54-202ENST00000502850 CLEC10AQ8IUN9 316 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 KIAA0825Q8IV33 1275 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 KIAA0895Q8NCT3 520 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 ERMNQ8TAM6 284 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 MBOAT7Q96N66 472 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 NAPGQ99747 312 aaPredicted RBP13.34□□□□□ -0.27
NUP54-202ENST00000502850 ARID3AQ99856 593 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 AMNQ9BXJ7 453 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 PCDHA1Q9Y5I3 950 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 EPN1Q9Y6I3 576 aaPredicted RBP13.34□□□□□ -0.27
NUP54-202ENST00000502850 SLX4Q8IY92 1834 aa13.34□□□□□ -0.27
NUP54-202ENST00000502850 POTEMA6NI47 508 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 B4DLN1 442 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 TUBBP07437 444 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 MCM6Q14566 821 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 MAN2A1Q16706 1144 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 WHAMMP3Q1A5X7 153 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 ABCB5Q2M3G0 1257 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 ZNF569Q5MCW4 686 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 CCDC65Q8IXS2 484 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 TXLNBQ8N3L3 684 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 KCTD17Q8N5Z5 321 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 PCMTD1Q96MG8 357 aaPredicted RBP13.33□□□□□ -0.28
NUP54-202ENST00000502850 ANO3Q9BYT9 981 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 DNAJC18Q9H819 358 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 TMOD2Q9NZR1 351 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 RNF181Q9P0P0 153 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 FAM198AQ9UFP1 575 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 HERC5Q9UII4 1024 aaKnown RBP13.33□□□□□ -0.28
NUP54-202ENST00000502850 CDC23Q9UJX2 597 aa13.33□□□□□ -0.28
NUP54-202ENST00000502850 KIF3CO14782 793 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 FANCGO15287 622 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 GNA14O95837 355 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 FCER1AP12319 257 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 SLC16A2P36021 539 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 KIF4BQ2VIQ3 1234 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 VWA3BQ502W6 1294 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 RSRC2Q7L4I2 434 aaKnown RBP13.32□□□□□ -0.28
NUP54-202ENST00000502850 SRGAP1Q7Z6B7 1085 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 DDX12PQ92771 950 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 EDEM3Q9BZQ6 932 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 TSGA10Q9BZW7 698 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 TTYH3Q9C0H2 523 aa13.32□□□□□ -0.28
NUP54-202ENST00000502850 SPDYE3A6NKU9 549 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 KRT86O43790 486 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 IDEP14735 1019 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 CBX1P83916 185 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 GABPB1Q06547 395 aaPredicted RBP13.31□□□□□ -0.28
NUP54-202ENST00000502850 EHHADHQ08426 723 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 TCP10Q12799 353 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 RBM26Q5T8P6 1007 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms