RNA–Protein interactions for RNA: ENST00000499045.2

CHFR-206, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 505 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-206	ENST00000499045	CCND2	P30279	289 aa		29.06	■■■□□ 2.24
CHFR-206	ENST00000499045	PKN1	Q16512	942 aa		29.06	■■■□□ 2.24
CHFR-206	ENST00000499045	TRIM60	Q495X7	471 aa		29.06	■■■□□ 2.24
CHFR-206	ENST00000499045	COPS5	Q92905	334 aa		29.06	■■■□□ 2.24
CHFR-206	ENST00000499045	STARD7	Q9NQZ5	370 aa		29.06	■■■□□ 2.24
CHFR-206	ENST00000499045	NAPA	P54920	295 aa		29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	TEX2	Q8IWB9	1127 aa		29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	OR6J1	Q8NGC5	347 aa		29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	GLT1D1	Q96MS3	346 aa		29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	RBM27	Q9P2N5	1060 aa	Known RBP	29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	DDX41	Q9UJV9	622 aa	Known RBP	29.05	■■■□□ 2.24
CHFR-206	ENST00000499045	SCG2	P13521	617 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	MRPS9	P82933	396 aa	Known RBP	29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	UBE2S	Q16763	222 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	LY6K	Q17RY6	165 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	CXCL17	Q6UXB2	119 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	PHKB	Q93100	1093 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	RNF26	Q9BY78	433 aa	Predicted RBP	29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	RIC8A	Q9NPQ8	531 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	29.04	■■■□□ 2.24
CHFR-206	ENST00000499045	ATP11B	Q9Y2G3	1177 aa		29.04	■■■□□ 2.24
CHFR-206	ENST00000499045		A6NJR5	290 aa		29.03	■■■□□ 2.24
CHFR-206	ENST00000499045	ZEB2	O60315	1214 aa		29.03	■■■□□ 2.24
CHFR-206	ENST00000499045	STAM2	O75886	525 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	CABYR	O75952	493 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	CPT1A	P50416	773 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	PCNX4	Q63HM2	1172 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	XRRA1	Q6P2D8	792 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	ZFP91	Q96JP5	570 aa	Predicted RBP	29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	INPP4A	Q96PE3	977 aa	Predicted RBP	29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	MRVI1	Q9Y6F6	885 aa		29.02	■■■□□ 2.24
CHFR-206	ENST00000499045	GH1	P01241	217 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	SYN1	P17600	705 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	CDK7	P50613	346 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	TLE2	Q04725	743 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	ARHGAP1	Q07960	439 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	KCNV1	Q6PIU1	500 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	ANKRD33	Q7Z3H0	272 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	TPCN1	Q9ULQ1	816 aa		29.01	■■■□□ 2.23
CHFR-206	ENST00000499045	SMCO2	A6NFE2	343 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045	PPFIA3	O75145	1194 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045	AK2	P54819	239 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045	EMID1	Q96A84	441 aa	Predicted RBP	29	■■■□□ 2.23
CHFR-206	ENST00000499045	SLC26A6	Q9BXS9	759 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045	PCDHA6	Q9UN73	950 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045	PCDHA8	Q9Y5H6	950 aa		29	■■■□□ 2.23
CHFR-206	ENST00000499045		A0A0U1RQG5	324 aa	Predicted RBP	28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	ESYT2	A0FGR8	921 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	TGFB3	P10600	412 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	ICAM3	P32942	547 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	ADCY7	P51828	1080 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	PURA	Q00577	322 aa	Known RBP	28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	STK3	Q13188	491 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	ANKRD1	Q15327	319 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	SLC43A3	Q8NBI5	491 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	TOX2	Q96NM4	488 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	GLT8D2	Q9H1C3	349 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	PRO3102	Q9H379	93 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	POLR3E	Q9NVU0	708 aa		28.99	■■■□□ 2.23
CHFR-206	ENST00000499045	GRIN2D	O15399	1336 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	SPDYE3	A6NKU9	549 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	ARVCF	O00192	962 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	CLK2	P49760	499 aa	Known RBP	28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	AKAP17A	Q02040	695 aa	Known RBP	28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	SCRN1	Q12765	414 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	ZMYND12	Q9H0C1	365 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	PDLIM7	Q9NR12	457 aa		28.98	■■■□□ 2.23
CHFR-206	ENST00000499045	SPATA31C2	B4DYI2	1134 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	PFKFB2	O60825	505 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	NEK4	P51957	841 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	SP2	Q02086	613 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	SEMA3F	Q13275	785 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	GNPTAB	Q3T906	1256 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	BRDT	Q58F21	947 aa	Predicted RBP	28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	AFG1L	Q8WV93	481 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	VTI1A	Q96AJ9	217 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	RTEL1	Q9NZ71	1219 aa		28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	COLQ	Q9Y215	455 aa	Predicted RBP	28.97	■■■□□ 2.23
CHFR-206	ENST00000499045	MYH7B	A7E2Y1	1941 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	SCN10A	Q9Y5Y9	1956 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	CPLX1	O14810	134 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	KPNA6	O60684	536 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	PQBP1	O60828	265 aa	Known RBP	28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	FOS	P01100	380 aa	Predicted RBP	28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	UBA1	P22314	1058 aa	Known RBP	28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	LAMC2	Q13753	1193 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	CHRDL2	Q6WN34	429 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	GDF15	Q99988	308 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	SLK	Q9H2G2	1235 aa	Predicted RBP	28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	PCDH10	Q9P2E7	1040 aa		28.96	■■■□□ 2.23
CHFR-206	ENST00000499045	MMP3	P08254	477 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	MYL3	P08590	195 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	SSRP1	Q08945	709 aa	Known RBP	28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	ITGA7	Q13683	1181 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	CELF3	Q5SZQ8	465 aa	Known RBP	28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	MYSM1	Q5VVJ2	828 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	SH3RF1	Q7Z6J0	888 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	DHX37	Q8IY37	1157 aa	Known RBP	28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	TRIM22	Q8IYM9	498 aa		28.95	■■■□□ 2.22
CHFR-206	ENST00000499045	CCDC12	Q8WUD4	166 aa	Predicted RBP	28.95	■■■□□ 2.22

Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms