RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 NAA25Q14CX7 972 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 ELF2Q15723 593 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 SPDYE1Q8NFV5 336 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 TMX1Q9H3N1 280 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 INSL6Q9Y581 213 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 R4GN57 208 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CDC42BPAQ5VT25 1732 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 RIC1Q4ADV7 1423 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CLNS1AP54105 237 aaKnown RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 HERVK_113P62684 666 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 KCNC4Q03721 635 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CACNB2Q08289 660 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 TTC19Q6DKK2 380 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 RUFY3Q7L099 469 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 DPH6Q7L8W6 267 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 LUZP1Q86V48 1076 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 RNF135Q8IUD6 432 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 RTKNQ9BST9 563 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 ALG1Q9BT22 464 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 SEC31BQ9NQW1 1179 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 DISC1Q9NRI5 854 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 POLLQ9UGP5 575 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 NAV2Q8IVL1 2488 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 A6NJR5 290 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 NDC80O14777 642 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CAND2O75155 1236 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 KRT38O76015 456 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 TIMP1P01033 207 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 PAX7P23759 505 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 ZNF280AP59817 542 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 SIGLEC14Q08ET2 396 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 FAPQ12884 760 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 WTAPQ15007 396 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 WHAMMP3Q1A5X7 153 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 C17orf99Q6UX52 265 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 SND1Q7KZF4 910 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP54-216ENST00000498143 ASCC2Q9H1I8 757 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 EPC1Q9H2F5 836 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 MKNK2Q9HBH9 465 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 KCNQ5Q9NR82 932 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 MOXD2PA6NHM9 499 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 PTH1RQ03431 593 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 VARS2Q5ST30 1063 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 ODR4Q5SWX8 454 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 HFE2Q6ZVN8 426 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 SPC24Q8NBT2 197 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 FAM151AQ8WW52 585 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 N4BP2L2Q92802 583 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 POM121Q96HA1 1249 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 BCAS3Q9H6U6 928 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 LUC7LQ9NQ29 371 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 ADD3Q9UEY8 706 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 SFMBT1Q9UHJ3 866 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 ITM2BQ9Y287 266 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 MACROD2A1Z1Q3 448 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 WDR46O15213 610 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 CTNND1O60716 968 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 DNAJC8O75937 253 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 GNAT1P11488 350 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 CCND3P30281 292 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 DNAJA1P31689 397 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 NRLP54845 237 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 IRX5P78411 483 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 MAP7Q14244 749 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 CDC37Q16543 378 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 ACBD5Q5T8D3 534 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 C19orf48Q6RUI8 117 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 GPR142Q7Z601 462 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 GPR20Q99678 358 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 SELENOSQ9BQE4 189 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 SRRTQ9BXP5 876 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 KRT10P13645 584 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 KIF5BP33176 963 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 MTMR2Q13614 643 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 CCDC158Q5M9N0 1113 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 LLGL2Q6P1M3 1020 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 CCDC149Q6ZUS6 474 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 ADHFE1Q8IWW8 467 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 FAM178BQ8IXR5 827 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 MYRIPQ8NFW9 859 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 FAM81BQ96LP2 452 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 RPS6KC1Q96S38 1066 aa5.69□□□□□ -1.5
USP54-216ENST00000498143 MAK16Q9BXY0 300 aaKnown RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 TUBA8Q9NY65 449 aaPredicted RBP5.69□□□□□ -1.5
USP54-216ENST00000498143 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 PPFIA2O75334 1257 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 GMNNO75496 209 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 KRT18P05783 430 aaKnown RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 IL9P15248 144 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ITGA6P23229 1130 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 MLLT3P42568 568 aaPredicted RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 KIF11P52732 1056 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 MAP3K7CLP57077 242 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 RIPK4P57078 832 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 CSTF1Q05048 431 aaKnown RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 SEPT2Q15019 361 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 HSP90AA5PQ58FG0 334 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 TMCO3Q6UWJ1 677 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 EVI5LQ96CN4 794 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 PPP1R9BQ96SB3 815 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms