RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TOB1P50616 345 aaPredicted RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 PRELPP51888 382 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 NIPA1Q7RTP0 329 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 HOMEZQ8IX15 550 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 HPSEQ9Y251 543 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 CHD4Q14839 1912 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 TESPA1A2RU30 521 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 CEP55Q53EZ4 464 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 FAM160B1Q5W0V3 765 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 POTEDQ86YR6 584 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 ENGASEQ8NFI3 743 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 TUFT1Q9NNX1 390 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 ZNF112Q9UJU3 913 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 EXOC7Q9UPT5 735 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 PVALEFA0A1B0GWK0 134 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 SFPQP23246 707 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP54-215ENST00000497106 HOXA13P31271 388 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 MTIF2P46199 727 aaKnown RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 UBASH3AP57075 661 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 ZNF658Q5TYW1 1059 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 RBM43Q6ZSC3 357 aaKnown RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 HS2ST1Q7LGA3 356 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 RDM1Q8NG50 284 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 DHTKD1Q96HY7 919 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 RMDN3Q96TC7 470 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 PARK7Q99497 189 aaKnown RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 RIT2Q99578 217 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 LUC7LQ9NQ29 371 aaKnown RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 PCDHA5Q9Y5H7 936 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 BAZ2AQ9UIF9 1905 aaKnown RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 CALUO43852 315 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 GNA14O95837 355 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 CYP3A4P08684 503 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 SNAP25P60880 206 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 STXBP2Q15833 593 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 BRDTQ58F21 947 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 MIS18BP1Q6P0N0 1132 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 CCDC112Q8NEF3 446 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 GOLGA5Q8TBA6 731 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 ZKSCAN4Q969J2 545 aaPredicted RBP9.34□□□□□ -0.91
USP54-215ENST00000497106 COL4A3BPQ9Y5P4 624 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 CASZ1Q86V15 1759 aa9.34□□□□□ -0.91
USP54-215ENST00000497106 BACH1O14867 736 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 CHMP2AO43633 222 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 CLSTN1O94985 981 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 PLCG1P19174 1290 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 SMTNP53814 917 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 ALCAMQ13740 583 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TRIM14Q14142 442 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 LONRF3Q496Y0 759 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 CCDC40Q4G0X9 1142 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 GPBP1Q86WP2 473 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TNFRSF25Q93038 417 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 EPSTI1Q96J88 318 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 AZI2Q9H6S1 392 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 GBA2Q9HCG7 927 aaPredicted RBP9.33□□□□□ -0.92
USP54-215ENST00000497106 IMPACTQ9P2X3 320 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TDP2O95551 362 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 GCLCP48506 637 aaPredicted RBP9.33□□□□□ -0.92
USP54-215ENST00000497106 CETN1Q12798 172 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 KCNB1Q14721 858 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 LUZP1Q86V48 1076 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 ZSCAN30Q86W11 494 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TIPINQ9BVW5 301 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 SLC38A10Q9HBR0 1119 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 MAN1B1Q9UKM7 699 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 FAM205CA6NFA0 338 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TULP1O00294 542 aaPredicted RBP9.33□□□□□ -0.92
USP54-215ENST00000497106 CDC25BP30305 580 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 MTMR1Q13613 665 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 EPHA7Q15375 998 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 RAD54LQ92698 747 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 GPRASP2Q96D09 838 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 PLIN2Q99541 437 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 TAF1DQ9H5J8 278 aaPredicted RBP9.33□□□□□ -0.92
USP54-215ENST00000497106 CTNND2Q9UQB3 1225 aa9.33□□□□□ -0.92
USP54-215ENST00000497106 ASB14A6NK59 587 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 PSAPP07602 524 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 SPATA1Q5VX52 437 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 ISM2Q6H9L7 571 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 FMNL3Q8IVF7 1028 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 SYCP3Q8IZU3 236 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 SPC24Q8NBT2 197 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 ATG4CQ96DT6 458 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 NAP1L5Q96NT1 182 aaPredicted RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 JPH2Q9BR39 696 aaPredicted RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 CYP3A7-CYP3A51PA0A087WV96 503 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 NOP56O00567 594 aaKnown RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 CYP3A7P24462 503 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 SNW1Q13573 536 aaKnown RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 ENOX1Q8TC92 643 aaKnown RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 IFT74Q96LB3 600 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 MXRA8Q9BRK3 442 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 KCND2Q9NZV8 630 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 TUBE1Q9UJT0 475 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 KIAA1024Q9UPX6 916 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 LTBP1Q14766 1721 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 PHLPP2Q6ZVD8 1323 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 WDR64B1ANS9 1081 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 ADM5C9JUS6 153 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms