RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 AGBL2Q5U5Z8 902 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 CNNM4Q6P4Q7 775 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 PDXDC1Q6P996 788 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 DAGLBQ8NCG7 672 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 NDST4Q9H3R1 872 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 TAF1DQ9H5J8 278 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-230ENST00000495090 ATP6V0A4Q9HBG4 840 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 SMARCAL1Q9NZC9 954 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 EHD2Q9NZN4 543 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 SALL4Q9UJQ4 1053 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 TMEM59LQ9UK28 342 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 PCDHA4Q9UN74 947 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 PLAAQ9Y263 795 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 PCDHGC5Q9Y5F6 944 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 NHSL1Q5SYE7 1610 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MINDY4BA8MYZ0 360 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 H0YGN5 161 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 NCK2O43639 380 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 ORC4O43929 436 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 DNAJC8O75937 253 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-230ENST00000495090 NT5C2P49902 561 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 AMPD3Q01432 767 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 PDE4DQ08499 809 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MTMR3Q13615 1198 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 RASSF8Q8NHQ8 419 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 N4BP2L2Q92802 583 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-230ENST00000495090 DDX20Q9UHI6 824 aaKnown RBP10.68□□□□□ -0.7
SYNE1-230ENST00000495090 NFS1Q9Y697 457 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 FLT1P17948 1338 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MAGEB6P1A0A0J9YX57 407 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 LRRC53A6NM62 1247 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 BTNL10A8MVZ5 291 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 KIF5BP33176 963 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MRPS25P82663 173 aaKnown RBP10.68□□□□□ -0.7
SYNE1-230ENST00000495090 STK4Q13043 487 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 NAB2Q15742 525 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MEI1Q5TIA1 1274 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MAATS1Q7Z4T9 603 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 TEX11Q8IYF3 940 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 SYNE4Q8N205 404 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 TBC1D22AQ8WUA7 517 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 IFT81Q8WYA0 676 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 PSMB7Q99436 277 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 OSBPL7Q9BZF2 842 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 KDM4CQ9H3R0 1056 aa10.68□□□□□ -0.7
SYNE1-230ENST00000495090 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.68□□□□□ -0.7
SYNE1-230ENST00000495090 MYH10P35580 1976 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 EPHB6O15197 1021 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 MGRN1O60291 552 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 CYP7A1P22680 504 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 GUCY2FP51841 1108 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 LRRC63Q05C16 580 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 HGSNATQ68CP4 663 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 RRAGAQ7L523 313 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 CACNA2D3Q8IZS8 1091 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 MIGA1Q8NAN2 632 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 USP38Q8NB14 1042 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 TATDN2Q93075 761 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 MS4A14Q96JA4 679 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 CALR3Q96L12 384 aaKnown RBP10.67□□□□□ -0.7
SYNE1-230ENST00000495090 KRT12Q99456 494 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 RIOK1Q9BRS2 568 aaKnown RBP10.67□□□□□ -0.7
SYNE1-230ENST00000495090 RNF39Q9H2S5 420 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 LRP2BPQ9P2M1 347 aa10.67□□□□□ -0.7
SYNE1-230ENST00000495090 MYH1P12882 1939 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 A0A1B0GUA9 196 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CCDC194A0A1B0GVG4 234 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ESYT3A0FGR9 886 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CCDC189A1A4V9 331 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ZSCAN5CA6NGD5 496 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 STARD3NLO95772 234 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SERPING1P05155 500 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ECHS1P30084 290 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 HSD17B3P37058 310 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SLC1A4P43007 532 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SLC8A3P57103 927 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PPP2R2AP63151 447 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ASIC1P78348 528 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SATB1Q01826 763 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 RASSF7Q02833 373 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SLC9C1Q4G0N8 1177 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CCDC178Q5BJE1 867 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SPDYCQ5MJ68 293 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 TLDC1Q6P9B6 456 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CABP7Q86V35 215 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 FAM228AQ86W67 206 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 FMNL3Q8IVF7 1028 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 KIAA0895Q8NCT3 520 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SDR42E1Q8WUS8 393 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CENPTQ96BT3 561 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SEC16BQ96JE7 1060 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SEMA6BQ9H3T3 888 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CNOT10Q9H9A5 744 aaKnown RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PPANQ9NQ55 473 aaKnown RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 FAM207AQ9NSI2 230 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 TCP11L1Q9NUJ3 509 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CEP72Q9P209 647 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SWAP70Q9UH65 585 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 TPX2Q9ULW0 747 aaKnown RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ATP8B3O60423 1300 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms