RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 ARHGAP1Q07960 439 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 NBPF20Q3BBV1 942 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 FAM109BQ6ICB4 259 aaPredicted RBP12.29□□□□□ -0.44
NELFE-213ENST00000494956 MFSD5Q6N075 450 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 USP17L6PQ6QN14 398 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 MICU3Q86XE3 530 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 RNPC3Q96LT9 517 aaKnown RBP12.29□□□□□ -0.44
NELFE-213ENST00000494956 NEK1Q96PY6 1258 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 IWS1Q96ST2 819 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.29□□□□□ -0.442e-7■■■□□ 16.9
NELFE-213ENST00000494956 BCAS3Q9H6U6 928 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 POLR3EQ9NVU0 708 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 DDX41Q9UJV9 622 aaKnown RBP12.29□□□□□ -0.44
NELFE-213ENST00000494956 BRPF3Q9ULD4 1205 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 LAMA3Q16787 3333 aa12.29□□□□□ -0.44
NELFE-213ENST00000494956 A6NJR5 290 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 NKRFO15226 690 aaKnown RBP eCLIP12.28□□□□□ -0.44
NELFE-213ENST00000494956 MMP3P08254 477 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 EXOSC10Q01780 885 aaKnown RBP12.28□□□□□ -0.44
NELFE-213ENST00000494956 SP2Q02086 613 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 FAM47CQ5HY64 1035 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 RRP36Q96EU6 259 aaKnown RBP12.28□□□□□ -0.44
NELFE-213ENST00000494956 SCLYQ96I15 445 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 MTG1Q9BT17 334 aaPredicted RBP12.28□□□□□ -0.44
NELFE-213ENST00000494956 SPZ1Q9BXG8 430 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 WNT8AQ9H1J5 351 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 ALDH8A1Q9H2A2 487 aaPredicted RBP12.28□□□□□ -0.44
NELFE-213ENST00000494956 HIPK3Q9H422 1215 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 SLC12A7Q9Y666 1083 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 MRVI1Q9Y6F6 885 aa12.28□□□□□ -0.44
NELFE-213ENST00000494956 TRIP12Q14669 1992 aaPredicted RBP12.28□□□□□ -0.44
NELFE-213ENST00000494956 GRXCR1A8MXD5 290 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 EIF3JO75822 258 aaKnown RBP12.27□□□□□ -0.45
NELFE-213ENST00000494956 GH1P01241 217 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 KIF5BP33176 963 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 LIFRP42702 1097 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 MRPS9P82933 396 aaKnown RBP12.27□□□□□ -0.45
NELFE-213ENST00000494956 TMEM240Q5SV17 173 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 VSIG10LQ86VR7 867 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 FANCBQ8NB91 859 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 KAT2BQ92831 832 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 MAP3K14Q99558 947 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 MTA3Q9BTC8 594 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 NOC4LQ9BVI4 516 aaKnown RBP12.27□□□□□ -0.45
NELFE-213ENST00000494956 MTMR10Q9NXD2 777 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 RTEL1Q9NZ71 1219 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 TELO2Q9Y4R8 837 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 GBF1Q92538 1859 aa12.27□□□□□ -0.45
NELFE-213ENST00000494956 MEIS2O14770 477 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 ZNF286BP0CG31 522 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 PPIGQ13427 754 aaKnown RBP eCLIP12.26□□□□□ -0.451e-7■■■■■ 31
NELFE-213ENST00000494956 UBE2SQ16763 222 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 RNF20Q5VTR2 975 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 APOA5Q6Q788 366 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 TMTC3Q6ZXV5 915 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 ZNF365Q70YC5 407 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 DHX32Q7L7V1 743 aaKnown RBP12.26□□□□□ -0.45
NELFE-213ENST00000494956 SGMS1Q86VZ5 419 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 TMTC2Q8N394 836 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 VWCEQ96DN2 955 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 ALG1Q9BT22 464 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 MAF1Q9H063 256 aa12.26□□□□□ -0.45
NELFE-213ENST00000494956 GGPS1O95749 300 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 UBA1P22314 1058 aaKnown RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 CDC27P30260 824 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 CCND2P30279 289 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 SEMA3FQ13275 785 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 HSDL1Q3SXM5 330 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 TSGA10IPQ3SY00 556 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 BRDTQ58F21 947 aaPredicted RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 GPR153Q6NV75 609 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 DHX37Q8IY37 1157 aaKnown RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 TMEM199Q8N511 208 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 SMARCC2Q8TAQ2 1214 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 GUCD1Q96NT3 240 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 TTYH1Q9H313 450 aaPredicted RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 FAM217BQ9NTX9 383 aaPredicted RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 MAP3K20Q9NYL2 800 aaKnown RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 CXXC1Q9P0U4 656 aaPredicted RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 SEC63Q9UGP8 760 aaKnown RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 NAP1L2Q9ULW6 460 aaPredicted RBP12.25□□□□□ -0.45
NELFE-213ENST00000494956 SNX14Q9Y5W7 946 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 CNTNAP5Q8WYK1 1306 aa12.25□□□□□ -0.45
NELFE-213ENST00000494956 LAMA2P24043 3122 aaKnown RBP12.24□□□□□ -0.45
NELFE-213ENST00000494956 KLF18A0A0U1RQI7 1052 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 PPFIA3O75145 1194 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 NEFLP07196 543 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 CALM1P0DP23 149 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 CALM2P0DP24 149 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 CALM3P0DP25 149 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 SMARCA1P28370 1054 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 HSPA4P34932 840 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 PBX2P40425 430 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 GNAQP50148 359 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 ZNF200P98182 395 aaPredicted RBP12.24□□□□□ -0.45
NELFE-213ENST00000494956 APOBRQ0VD83 1088 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 FUT2Q10981 343 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 FRMPD4Q14CM0 1322 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 ZNF697Q5TEC3 545 aa12.24□□□□□ -0.45
NELFE-213ENST00000494956 MYSM1Q5VVJ2 828 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms