RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 BARHL2Q9NY43 387 aa18.31■□□□□ 0.52
LIME1-209ENST00000494776 ATP11BQ9Y2G3 1177 aa18.31■□□□□ 0.52
LIME1-209ENST00000494776 GTF3C3Q9Y5Q9 886 aa18.31■□□□□ 0.52
LIME1-209ENST00000494776 MRVI1Q9Y6F6 885 aa18.31■□□□□ 0.52
LIME1-209ENST00000494776 SMCO2A6NFE2 343 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 STXBP3O00186 592 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 IFNAR1P17181 557 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 ADCY7P51828 1080 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 AK2P54819 239 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 RTP1P59025 263 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 SSRP1Q08945 709 aaKnown RBP18.3■□□□□ 0.52
LIME1-209ENST00000494776 UBE2SQ16763 222 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 LY6KQ17RY6 165 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 CCSAPQ6IQ19 270 aaPredicted RBP18.3■□□□□ 0.52
LIME1-209ENST00000494776 TRIM22Q8IYM9 498 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 IL31RAQ8NI17 732 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 CCDC12Q8WUD4 166 aaPredicted RBP18.3■□□□□ 0.52
LIME1-209ENST00000494776 RNF26Q9BY78 433 aaPredicted RBP18.3■□□□□ 0.52
LIME1-209ENST00000494776 EHMT1Q9H9B1 1298 aa18.3■□□□□ 0.52
LIME1-209ENST00000494776 UPF2Q9HAU5 1272 aaKnown RBP18.3■□□□□ 0.52
LIME1-209ENST00000494776 ARIH2O95376 493 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 CPT1AP50416 773 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 NKX3-2P78367 333 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 NTRK3Q16288 839 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 KCNV1Q6PIU1 500 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 COPS5Q92905 334 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 IL17RAQ96F46 866 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 ZFP91Q96JP5 570 aaPredicted RBP18.29■□□□□ 0.52
LIME1-209ENST00000494776 GLT8D2Q9H1C3 349 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 RIC8AQ9NPQ8 531 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 TPCN1Q9ULQ1 816 aa18.29■□□□□ 0.52
LIME1-209ENST00000494776 CTAGE5O15320 804 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 STAM2O75886 525 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 GH1P01241 217 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 GNPTABQ3T906 1256 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 TYW1BQ6NUM6 668 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 CCDC62Q6P9F0 684 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 CXCL17Q6UXB2 119 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 C22orf23Q9BZE7 217 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 RTEL1Q9NZ71 1219 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 PRKAG2Q9UGJ0 569 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 ZMYND8Q9ULU4 1186 aaPredicted RBP18.28■□□□□ 0.52
LIME1-209ENST00000494776 PCDHA6Q9UN73 950 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 PCDHA8Q9Y5H6 950 aa18.28■□□□□ 0.52
LIME1-209ENST00000494776 ELP1O95163 1332 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 FRMPD4Q14CM0 1322 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 CABYRO75952 493 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 CDKL5O76039 1030 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 MYL3P08590 195 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 TRIM60Q495X7 471 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 PCNX4Q63HM2 1172 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 C6orf50Q9HD87 102 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 POLR3EQ9NVU0 708 aa18.27■□□□□ 0.52
LIME1-209ENST00000494776 DDX41Q9UJV9 622 aaKnown RBP18.27■□□□□ 0.52
LIME1-209ENST00000494776 A0A0U1RQG5 324 aaPredicted RBP18.26■□□□□ 0.51
LIME1-209ENST00000494776 FOSP01100 380 aaPredicted RBP18.26■□□□□ 0.51
LIME1-209ENST00000494776 SYN1P17600 705 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 MRPS9P82933 396 aaKnown RBP18.26■□□□□ 0.51
LIME1-209ENST00000494776 SCRN1Q12765 414 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 PKN1Q16512 942 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 XRRA1Q6P2D8 792 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 TEX2Q8IWB9 1127 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 DHX37Q8IY37 1157 aaKnown RBP18.26■□□□□ 0.51
LIME1-209ENST00000494776 CCDC148Q8NFR7 591 aa18.26■□□□□ 0.51
LIME1-209ENST00000494776 PFKFB2O60825 505 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 PQBP1O60828 265 aaKnown RBP18.25■□□□□ 0.51
LIME1-209ENST00000494776 RGS20O76081 388 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 DEXIO95424 95 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 TGFB3P10600 412 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 GNA11P29992 359 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 SNX17Q15036 470 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 HABP4Q5JVS0 413 aaKnown RBP18.25■□□□□ 0.51
LIME1-209ENST00000494776 C1orf53Q5VUE5 145 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 NLRX1Q86UT6 975 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 PRDM5Q9NQX1 630 aaPredicted RBP18.25■□□□□ 0.51
LIME1-209ENST00000494776 CEP290O15078 2479 aa18.25■□□□□ 0.51
LIME1-209ENST00000494776 ALPK3Q96L96 1907 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 DCDC2CA8MYV0 355 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 SORBS3O60504 671 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 KPNA6O60684 536 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 TLE2Q04725 743 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 ARHGAP1Q07960 439 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 AP3B2Q13367 1082 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 LAMC2Q13753 1193 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 BICD2Q8TD16 824 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 AFG1LQ8WV93 481 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 PGBD1Q96JS3 809 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 ZMYND12Q9H0C1 365 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 MLXIPQ9HAP2 919 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 TMEM260Q9NX78 707 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 VPS54Q9P1Q0 977 aa18.24■□□□□ 0.51
LIME1-209ENST00000494776 MROH7Q68CQ1 1323 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 ESYT2A0FGR8 921 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 A6NJR5 290 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 ARVCFO00192 962 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 FIBPO43427 364 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 GGPS1O95749 300 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 NLRP5P59047 1200 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 ITGA7Q13683 1181 aa18.23■□□□□ 0.51
LIME1-209ENST00000494776 JAKMIP3Q5VZ66 844 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms