RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PARP1P09874 1014 aaKnown RBP14.76□□□□□ -0.05
SKA1-205ENST00000494518 IQCF3P0C7M6 154 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 ACTN1P12814 892 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 ARHGAP1Q07960 439 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 PTGISQ16647 500 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 ASPRV1Q53RT3 343 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 TMEM67Q5HYA8 995 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 GDF6Q6KF10 455 aaPredicted RBP14.76□□□□□ -0.05
SKA1-205ENST00000494518 CCDC62Q6P9F0 684 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 FBXO11Q86XK2 927 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 STAG2Q8N3U4 1231 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 RMDN3Q96TC7 470 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 JMJD4Q9H9V9 463 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 ZSWIM5Q9P217 1185 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 EPOPA6NHQ4 379 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 TNFRSF10AO00220 468 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 KPNA6O60684 536 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 CFBP00751 764 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 GH1P01241 217 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 PFKMP08237 780 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 IMMTQ16891 758 aaKnown RBP14.75□□□□□ -0.05
SKA1-205ENST00000494518 CCDC178Q5BJE1 867 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 ARHGEF16Q5VV41 709 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 KRT40Q6A162 431 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 SPRED2Q7Z698 418 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 TMCO2Q7Z6W1 182 aaPredicted RBP14.75□□□□□ -0.05
SKA1-205ENST00000494518 RGS22Q8NE09 1264 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 NSUN6Q8TEA1 469 aaKnown RBP14.75□□□□□ -0.05
SKA1-205ENST00000494518 ASB2Q96Q27 587 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 ALG1Q9BT22 464 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 OSBPL3Q9H4L5 887 aa14.75□□□□□ -0.05
SKA1-205ENST00000494518 ZNF286BP0CG31 522 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 RFC2P35250 354 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 TFF2Q03403 129 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 BFSP2Q13515 415 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 SKIV2LQ15477 1246 aaKnown RBP14.74□□□□□ -0.05
SKA1-205ENST00000494518 STXBP2Q15833 593 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 CYB5R4Q7L1T6 521 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 MCF2L2Q86YR7 1114 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 ADAMTS19Q8TE59 1207 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 ATXN2LQ8WWM7 1075 aaKnown RBP14.74□□□□□ -0.05
SKA1-205ENST00000494518 ARNTL2Q8WYA1 636 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 ANKS1AQ92625 1134 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 KAT2BQ92831 832 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 ZFP91Q96JP5 570 aaPredicted RBP14.74□□□□□ -0.05
SKA1-205ENST00000494518 NECAB3Q96P71 396 aaPredicted RBP14.74□□□□□ -0.05
SKA1-205ENST00000494518 UBAC1Q9BSL1 405 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 DSCC1Q9BVC3 393 aa14.74□□□□□ -0.05
SKA1-205ENST00000494518 MRPL11Q9Y3B7 192 aaKnown RBP14.74□□□□□ -0.05
SKA1-205ENST00000494518 HIP1O00291 1037 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 OPLAHO14841 1288 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 MYCLP12524 364 aaPredicted RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 MRPS5P82675 430 aaKnown RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 PTPN11Q06124 597 aaPredicted RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 IFIT1BQ5T764 474 aaKnown RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 IL27Q8NEV9 243 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 DHX38Q92620 1227 aaKnown RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 CTAGE1Q96RT6 745 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 SLC9A7Q96T83 725 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 KRT23Q9C075 422 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 PXMP2Q9NR77 195 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 DDX41Q9UJV9 622 aaKnown RBP14.73□□□□□ -0.05
SKA1-205ENST00000494518 MRVI1Q9Y6F6 885 aa14.73□□□□□ -0.05
SKA1-205ENST00000494518 MICAL3Q7RTP6 2002 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 PPP1R11O60927 126 aaPredicted RBP14.72□□□□□ -0.05
SKA1-205ENST00000494518 NR3C2P08235 984 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 CASTP20810 708 aaKnown RBP14.72□□□□□ -0.05
SKA1-205ENST00000494518 HOXA13P31271 388 aaPredicted RBP14.72□□□□□ -0.05
SKA1-205ENST00000494518 PSEN2P49810 448 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 TAP1Q03518 808 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 HOMER1Q86YM7 354 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 HERC6Q8IVU3 1022 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 IWS1Q96ST2 819 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 UHRF1Q96T88 793 aaPredicted RBP14.72□□□□□ -0.05
SKA1-205ENST00000494518 HDAC6Q9UBN7 1215 aa14.72□□□□□ -0.05
SKA1-205ENST00000494518 LCHNA4D1U4 455 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 KLRF2D3W0D1 207 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 KCNJ6P48051 423 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 FXR2P51116 673 aaKnown RBP eCLIP14.71□□□□□ -0.05
SKA1-205ENST00000494518 DEFB103AP81534 67 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 ZNF200P98182 395 aaPredicted RBP14.71□□□□□ -0.05
SKA1-205ENST00000494518 GPNMBQ14956 572 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 DGKDQ16760 1214 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 TCTN1Q2MV58 587 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 LRRC8DQ7L1W4 858 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 CCDC155Q8N6L0 562 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 C7orf31Q8N865 590 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 IL31RAQ8NI17 732 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 AMNQ9BXJ7 453 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 CNNM2Q9H8M5 875 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 CTNNA3Q9UI47 895 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 MAD2L2Q9UI95 211 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 MTCH2Q9Y6C9 303 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 KAT6AQ92794 2004 aa14.71□□□□□ -0.05
SKA1-205ENST00000494518 SPDYE4A6NLX3 237 aa14.7□□□□□ -0.06
SKA1-205ENST00000494518 GTPBP6O43824 516 aaPredicted RBP14.7□□□□□ -0.06
SKA1-205ENST00000494518 TLL1O43897 1013 aa14.7□□□□□ -0.06
SKA1-205ENST00000494518 EIF3JO75822 258 aaKnown RBP14.7□□□□□ -0.06
SKA1-205ENST00000494518 SELPP16109 830 aa14.7□□□□□ -0.06
SKA1-205ENST00000494518 PDE4AP27815 886 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms