RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 IL31RAQ8NI17 732 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 U2AF1L4Q8WU68 220 aaKnown RBP12.43□□□□□ -0.42
VPS13D-210ENST00000489961 SCFD2Q8WU76 684 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 PGBD1Q96JS3 809 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 GJB4Q9NTQ9 266 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 RBM47A0AV96 593 aaKnown RBP12.42□□□□□ -0.42
VPS13D-210ENST00000489961 TFRCP02786 760 aaKnown RBP12.42□□□□□ -0.42
VPS13D-210ENST00000489961 GJB2P29033 226 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 KRT2P35908 639 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 SREBF1P36956 1147 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 ADCYAP1R1P41586 468 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 TNFAIP2Q03169 654 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 TTLL4Q14679 1199 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 SAFBQ15424 915 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS13D-210ENST00000489961 GNPTABQ3T906 1256 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 ANO1Q5XXA6 986 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 KRT40Q6A162 431 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 KCNV1Q6PIU1 500 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 SEPT14Q6ZU15 432 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 NLRX1Q86UT6 975 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 RASGRP4Q8TDF6 673 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 WDR11Q9BZH6 1224 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 PDGFCQ9NRA1 345 aa12.42□□□□□ -0.42
VPS13D-210ENST00000489961 MYH7BA7E2Y1 1941 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 HTTP42858 3142 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 CCDC194A0A1B0GVG4 234 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 ADAMTS3O15072 1205 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 NKRFO15226 690 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 DUSP11O75319 330 aaKnown RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 MMP1P03956 469 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 TXNP10599 105 aaKnown RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 ZNF76P36508 570 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 MRPS9P82933 396 aaKnown RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 ARHGAP4P98171 946 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 NPY5RQ15761 445 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 LHX8Q68G74 356 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 KRT25Q7Z3Z0 450 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 INTS4Q96HW7 963 aaKnown RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 ZFP91Q96JP5 570 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 INPP4AQ96PE3 977 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-210ENST00000489961 CRISPLD2Q9H0B8 497 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 SPC25Q9HBM1 224 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 XPNPEP3Q9NQH7 507 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 RTEL1Q9NZ71 1219 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 MRVI1Q9Y6F6 885 aa12.41□□□□□ -0.42
VPS13D-210ENST00000489961 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.4□□□□□ -0.42
VPS13D-210ENST00000489961 POTEFA5A3E0 1075 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 M0R2N6 131 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 FIBPO43427 364 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 HSP90AA1P07900 732 aaKnown RBP12.4□□□□□ -0.42
VPS13D-210ENST00000489961 TGFB3P10600 412 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 SMPD1P17405 629 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 SOX10P56693 466 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 GUCY1B3Q02153 619 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 NONOQ15233 471 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS13D-210ENST00000489961 DUSP28Q4G0W2 176 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 DIS3L2Q8IYB7 885 aaKnown RBP12.4□□□□□ -0.42
VPS13D-210ENST00000489961 ARRDC4Q8NCT1 418 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 FBXO18Q8NFZ0 1043 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 CDHR1Q96JP9 859 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 AP5M1Q9H0R1 490 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 OGDHLQ9ULD0 1010 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 Q9Y3F1 56 aa12.4□□□□□ -0.42
VPS13D-210ENST00000489961 ADCY6O43306 1168 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 RGS20O76081 388 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 MYCNP04198 464 aaPredicted RBP12.39□□□□□ -0.43
VPS13D-210ENST00000489961 CYP3A4P08684 503 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 ICAM3P32942 547 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 USP11P51784 963 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 MTMR1Q13613 665 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 GNL2Q13823 731 aaKnown RBP12.39□□□□□ -0.43
VPS13D-210ENST00000489961 CCDC62Q6P9F0 684 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 RNF180Q86T96 592 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 TLK2Q86UE8 772 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 ANKLE1Q8NAG6 615 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 OXER1Q8TDS5 423 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 TBCKQ8TEA7 893 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 LENG1Q96BZ8 264 aaPredicted RBP12.39□□□□□ -0.43
VPS13D-210ENST00000489961 GPRASP2Q96D09 838 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 MXRA8Q9BRK3 442 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 JADE2Q9NQC1 790 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 GNEQ9Y223 722 aaKnown RBP12.39□□□□□ -0.43
VPS13D-210ENST00000489961 UBIAD1Q9Y5Z9 338 aa12.39□□□□□ -0.43
VPS13D-210ENST00000489961 SYNRGQ9UMZ2 1314 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 BTBD18B2RXH4 712 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 SPATA31C2B4DYI2 1134 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 KBTBD13C9JR72 458 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 H3BQV1 296 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 MAFGO15525 162 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 DYNC1LI2O43237 492 aaPredicted RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 ARIH2O95376 493 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 PGK1P00558 417 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 GH1P01241 217 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 C6orf222P0C671 652 aaPredicted RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 ITGB5P18084 799 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 EN2P19622 333 aaPredicted RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 PDCP20941 246 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 GJA9P57773 515 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 NR5A1Q13285 461 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 BECN1Q14457 450 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms