RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 NOD1Q9Y239 953 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 MRPL11Q9Y3B7 192 aaKnown RBP14.47□□□□□ -0.09
CPSF3-204ENST00000489403 XIRP2A4UGR9 3374 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 TNFRSF10AO00220 468 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 OPLAHO14841 1288 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 STXBP2Q15833 593 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 PTGISQ16647 500 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 ARHGEF16Q5VV41 709 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 GDF6Q6KF10 455 aaPredicted RBP14.46□□□□□ -0.09
CPSF3-204ENST00000489403 CHST3Q7LGC8 479 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 SESTD1Q86VW0 696 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 STAG2Q8N3U4 1231 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 UBAC1Q9BSL1 405 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 KRT23Q9C075 422 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 FTOQ9C0B1 505 aaKnown RBP eCLIP14.46□□□□□ -0.09
CPSF3-204ENST00000489403 CNNM2Q9H8M5 875 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 PXMP2Q9NR77 195 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 CTNNA3Q9UI47 895 aa14.46□□□□□ -0.09
CPSF3-204ENST00000489403 MYH7BA7E2Y1 1941 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 RFXAPO00287 272 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 ARHGEF15O94989 841 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 CFBP00751 764 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 MRPS5P82675 430 aaKnown RBP14.45□□□□□ -0.1
CPSF3-204ENST00000489403 SEC23AQ15436 765 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 IFIT1BQ5T764 474 aaKnown RBP14.45□□□□□ -0.1
CPSF3-204ENST00000489403 MICALL1Q8N3F8 863 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 CAGE1Q8TC20 777 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 PHOSPHO2Q8TCD6 241 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 DHX38Q92620 1227 aaKnown RBP14.45□□□□□ -0.1
CPSF3-204ENST00000489403 AMNQ9BXJ7 453 aa14.45□□□□□ -0.1
CPSF3-204ENST00000489403 DDX41Q9UJV9 622 aaKnown RBP14.45□□□□□ -0.1
CPSF3-204ENST00000489403 EPOPA6NHQ4 379 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 PPP1R11O60927 126 aaPredicted RBP14.44□□□□□ -0.1
CPSF3-204ENST00000489403 EIF3JO75822 258 aaKnown RBP14.44□□□□□ -0.1
CPSF3-204ENST00000489403 BAIAP3O94812 1187 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 NR3C2P08235 984 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 CASTP20810 708 aaKnown RBP14.44□□□□□ -0.1
CPSF3-204ENST00000489403 HSD17B4P51659 736 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 GHRHRQ02643 423 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 RBL2Q08999 1139 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 GPNMBQ14956 572 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 DGKDQ16760 1214 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 CYB5R4Q7L1T6 521 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 HERC6Q8IVU3 1022 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 CCDC155Q8N6L0 562 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 AFAP1L1Q8TED9 768 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 EMID1Q96A84 441 aaPredicted RBP14.44□□□□□ -0.1
CPSF3-204ENST00000489403 MTMR8Q96EF0 704 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 YTHDC1Q96MU7 727 aaKnown RBP14.44□□□□□ -0.1
CPSF3-204ENST00000489403 CERS4Q9HA82 394 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 GTF2IRD1Q9UHL9 959 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 MAD2L2Q9UI95 211 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 MRVI1Q9Y6F6 885 aa14.44□□□□□ -0.1
CPSF3-204ENST00000489403 COL4A4P53420 1690 aaPredicted RBP14.43□□□□□ -0.1
CPSF3-204ENST00000489403 KLRF2D3W0D1 207 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 RGS20O76081 388 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 GSPT1P15170 499 aaKnown RBP14.43□□□□□ -0.1
CPSF3-204ENST00000489403 PSEN2P49810 448 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 LRRC8DQ7L1W4 858 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 PPTC7Q8NI37 304 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 ADAMTS19Q8TE59 1207 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 PDCD2LQ9BRP1 358 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 HDAC6Q9UBN7 1215 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 MTCH2Q9Y6C9 303 aa14.43□□□□□ -0.1
CPSF3-204ENST00000489403 PALM3A6NDB9 673 aaPredicted RBP14.42□□□□□ -0.1
CPSF3-204ENST00000489403 HAS3O00219 553 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 ZBTB5O15062 677 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 F2P00734 622 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 ZNF286BP0CG31 522 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 CKBP12277 381 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 SELPP16109 830 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 POU3F3P20264 500 aaPredicted RBP14.42□□□□□ -0.1
CPSF3-204ENST00000489403 WDR5P61964 334 aaKnown RBP14.42□□□□□ -0.1
CPSF3-204ENST00000489403 TAP1Q03518 808 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 MFSD10Q14728 455 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 SLC35G1Q2M3R5 365 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 SPRED2Q7Z698 418 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 DHX37Q8IY37 1157 aaKnown RBP14.42□□□□□ -0.1
CPSF3-204ENST00000489403 UHRF1Q96T88 793 aaPredicted RBP14.42□□□□□ -0.1
CPSF3-204ENST00000489403 ALG1Q9BT22 464 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 KATNAL1Q9BW62 490 aa14.42□□□□□ -0.1
CPSF3-204ENST00000489403 KIF28PB7ZC32 967 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 RBAK-RBAKDNI3L0D1 243 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TLL1O43897 1013 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 NBNO60934 754 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 CXCL10P02778 98 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 MYCLP12524 364 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 PDE4AP27815 886 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 HOXA13P31271 388 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 KCNJ6P48051 423 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 LAMC2Q13753 1193 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 PGM5Q15124 567 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 KIAA0753Q2KHM9 967 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TCTN1Q2MV58 587 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 KRT40Q6A162 431 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 CNKSR3Q6P9H4 555 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 STOX1Q6ZVD7 989 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TMCO2Q7Z6W1 182 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 C7orf31Q8N865 590 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 IL31RAQ8NI17 732 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms