RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 ADGRA2Q96PE1 1338 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 A0A087X0B3 334 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 MANSC4A6NHS7 340 aaPredicted RBP12.98□□□□□ -0.33
C9orf3-220ENST00000489318 PDHXO00330 501 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 MEIS1O00470 390 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 SLC26A4O43511 780 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 ACTN4O43707 911 aaKnown RBP12.98□□□□□ -0.33
C9orf3-220ENST00000489318 GCLCP48506 637 aaPredicted RBP12.98□□□□□ -0.33
C9orf3-220ENST00000489318 SPIRE1Q08AE8 756 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 BAATQ14032 418 aaPredicted RBP12.98□□□□□ -0.33
C9orf3-220ENST00000489318 PGM5Q15124 567 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 TMEM266Q2M3C6 531 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 CEP55Q53EZ4 464 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 NSMFQ6X4W1 530 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 IL31RAQ8NI17 732 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 FAM20AQ96MK3 541 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 TAAR1Q96RJ0 339 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 PDCD2LQ9BRP1 358 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 RAB34Q9BZG1 259 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 MORF4L1Q9UBU8 362 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 UBIAD1Q9Y5Z9 338 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 ZNFX1Q9P2E3 1918 aaKnown RBP12.98□□□□□ -0.33
C9orf3-220ENST00000489318 FSD2A1L4K1 749 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 FAM155AB1AL88 458 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-220ENST00000489318 MSH4O15457 936 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 TOMM70O94826 608 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 TXLNAP40222 546 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 ERVK-9P63128 1117 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 ERVK-24P63145 666 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 PLS1Q14651 629 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 PRR16Q569H4 304 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 FAM43AQ8N2R8 423 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 DNERQ8NFT8 737 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 SLC5A5Q92911 643 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 PARK7Q99497 189 aaKnown RBP12.97□□□□□ -0.33
C9orf3-220ENST00000489318 PTPN18Q99952 460 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 MXRA8Q9BRK3 442 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 MMTAG2Q9BU76 263 aaKnown RBP12.97□□□□□ -0.33
C9orf3-220ENST00000489318 TTC12Q9H892 705 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-220ENST00000489318 DISC1Q9NRI5 854 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 THSD7BQ9C0I4 1608 aa12.97□□□□□ -0.33
C9orf3-220ENST00000489318 PP2D1A8MPX8 630 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 POLR2DO15514 142 aaKnown RBP12.96□□□□□ -0.33
C9orf3-220ENST00000489318 STAM2O75886 525 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 SLFN14P0C7P3 912 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 CYP2C8P10632 490 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 ITGB5P18084 799 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 ERCC3P19447 782 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 TECP42680 631 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 TXKP42681 527 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 ZNF157P51786 506 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-220ENST00000489318 UBXN2AP68543 259 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 MRPS9P82933 396 aaKnown RBP12.96□□□□□ -0.33
C9orf3-220ENST00000489318 FSTL1Q12841 308 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 CAMK4Q16566 473 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 LONRF3Q496Y0 759 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 PDXDC2PQ6P474 469 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 SH3RF1Q7Z6J0 888 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 CYP2W1Q8TAV3 490 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 NSUN6Q8TEA1 469 aaKnown RBP12.96□□□□□ -0.33
C9orf3-220ENST00000489318 RMDN3Q96TC7 470 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 PAGR1Q9BTK6 254 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 MROH8Q9H579 483 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 MAGEF1Q9HAY2 307 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 TUBE1Q9UJT0 475 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 VAV3Q9UKW4 847 aa12.96□□□□□ -0.33
C9orf3-220ENST00000489318 ASTN1O14525 1302 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 LOC102724159A0A0B4J2E5 919 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 POTEMA6NI47 508 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 TMEM88BA6NKF7 163 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 PEX10O60683 326 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 PSMD10O75832 226 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 EIF2AK2P19525 551 aaKnown RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 EDNRBP24530 442 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 ZNF76P36508 570 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 UBA7P41226 1012 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 MDM2Q00987 491 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 MKRN3Q13064 507 aaKnown RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 PWP2Q15269 919 aaKnown RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 FAM110CQ1W6H9 321 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 Q3C1V9 767 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 NAALADL2Q58DX5 795 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 HYIQ5T013 277 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 KANK3Q6NY19 840 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 B3GNT9Q6UX72 402 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 CABP7Q86V35 215 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 VSIG10LQ86VR7 867 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 GAS2L3Q86XJ1 694 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 PLA2G4DQ86XP0 818 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 FAM133AQ8N9E0 248 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 IQUBQ8NA54 791 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 CNNM3Q8NE01 707 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 SMCR8Q8TEV9 937 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 INPP4AQ96PE3 977 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-220ENST00000489318 IWS1Q96ST2 819 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 CUEDC2Q9H467 287 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 JADE2Q9NQC1 790 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 LRWD1Q9UFC0 647 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 SERTAD1Q9UHV2 236 aa12.95□□□□□ -0.34
C9orf3-220ENST00000489318 PCDHA12Q9UN75 941 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms