RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 DDX41Q9UJV9 622 aaKnown RBP28.88■■■□□ 2.21
HMGN1-217ENST00000489072 HSPA4P34932 840 aa28.87■■■□□ 2.21
HMGN1-217ENST00000489072 CCDC82Q8N4S0 544 aa28.87■■■□□ 2.21
HMGN1-217ENST00000489072 MTG1Q9BT17 334 aaPredicted RBP28.87■■■□□ 2.21
HMGN1-217ENST00000489072 TRPV6Q9H1D0 765 aa28.87■■■□□ 2.21
HMGN1-217ENST00000489072 PPP4R2Q9NY27 417 aa28.87■■■□□ 2.21
HMGN1-217ENST00000489072 hCG_1642624A0A1W2PR95 340 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 GH1P01241 217 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 CPA1P15085 419 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 FPGSQ05932 587 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 BRDTQ58F21 947 aaPredicted RBP28.86■■■□□ 2.21
HMGN1-217ENST00000489072 AFG1LQ8WV93 481 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 ZFP91Q96JP5 570 aaPredicted RBP28.86■■■□□ 2.21
HMGN1-217ENST00000489072 SEZ6LQ9BYH1 1024 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 SNX14Q9Y5W7 946 aa28.86■■■□□ 2.21
HMGN1-217ENST00000489072 B4GALT4O60513 344 aa28.85■■■□□ 2.21
HMGN1-217ENST00000489072 SYNE3Q6ZMZ3 975 aa28.85■■■□□ 2.21
HMGN1-217ENST00000489072 PPP1R12CQ9BZL4 782 aa28.85■■■□□ 2.21
HMGN1-217ENST00000489072 MRVI1Q9Y6F6 885 aa28.85■■■□□ 2.21
HMGN1-217ENST00000489072 FRMPD4Q14CM0 1322 aa28.85■■■□□ 2.21
HMGN1-217ENST00000489072 MFSD5Q6N075 450 aa28.84■■■□□ 2.21
HMGN1-217ENST00000489072 USP17L6PQ6QN14 398 aa28.84■■■□□ 2.21
HMGN1-217ENST00000489072 PPP1R13LQ8WUF5 828 aa28.84■■■□□ 2.21
HMGN1-217ENST00000489072 ALDH8A1Q9H2A2 487 aaPredicted RBP28.84■■■□□ 2.21
HMGN1-217ENST00000489072 MEIS2O14770 477 aa28.83■■■□□ 2.21
HMGN1-217ENST00000489072 KPNA6O60684 536 aa28.83■■■□□ 2.21
HMGN1-217ENST00000489072 MMP3P08254 477 aa28.83■■■□□ 2.21
HMGN1-217ENST00000489072 HMGB1P09429 215 aaKnown RBP28.83■■■□□ 2.21
HMGN1-217ENST00000489072 CCND2P30279 289 aa28.83■■■□□ 2.21
HMGN1-217ENST00000489072 NBPF20Q3BBV1 942 aa28.83■■■□□ 2.21
HMGN1-217ENST00000489072 JAKMIP1Q96N16 626 aaKnown RBP28.83■■■□□ 2.21
HMGN1-217ENST00000489072 ZBTB43O43298 467 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 REC8O95072 547 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 ERICH6BQ5W0A0 696 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 GPR153Q6NV75 609 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 GPKOWQ92917 476 aaPredicted RBP eCLIP28.82■■■□□ 2.22e-6■■■■□ 20.4
HMGN1-217ENST00000489072 EMID1Q96A84 441 aaPredicted RBP28.82■■■□□ 2.2
HMGN1-217ENST00000489072 TRMT13Q9NUP7 481 aaKnown RBP28.82■■■□□ 2.2
HMGN1-217ENST00000489072 UMODL1Q5DID0 1318 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 CNTNAP5Q8WYK1 1306 aa28.82■■■□□ 2.2
HMGN1-217ENST00000489072 KLF18A0A0U1RQI7 1052 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 PIK3CDO00329 1044 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 CYP2C18P33260 490 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 MRPS9P82933 396 aaKnown RBP28.81■■■□□ 2.2
HMGN1-217ENST00000489072 FUT2Q10981 343 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 RTN1Q16799 776 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 SMARCC2Q8TAQ2 1214 aa28.81■■■□□ 2.2
HMGN1-217ENST00000489072 RBM28Q9NW13 759 aaKnown RBP28.81■■■□□ 2.2
HMGN1-217ENST00000489072 CSF2RAP15509 400 aa28.8■■■□□ 2.2
HMGN1-217ENST00000489072 SP2Q02086 613 aa28.8■■■□□ 2.2
HMGN1-217ENST00000489072 CUL5Q93034 780 aa28.8■■■□□ 2.2
HMGN1-217ENST00000489072 NOC4LQ9BVI4 516 aaKnown RBP28.8■■■□□ 2.2
HMGN1-217ENST00000489072 HIPK3Q9H422 1215 aa28.8■■■□□ 2.2
HMGN1-217ENST00000489072 FAM217BQ9NTX9 383 aaPredicted RBP28.8■■■□□ 2.2
HMGN1-217ENST00000489072 Q6ZUG5 572 aa28.79■■■□□ 2.2
HMGN1-217ENST00000489072 Q7L0L9 218 aa28.79■■■□□ 2.2
HMGN1-217ENST00000489072 C16orf59Q7L2K0 433 aa28.79■■■□□ 2.2
HMGN1-217ENST00000489072 DOCK5Q9H7D0 1870 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 GOLGA8AA7E2F4 631 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 GOLGA8BA8MQT2 603 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 SORBS3O60504 671 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 UBA1P22314 1058 aaKnown RBP28.78■■■□□ 2.2
HMGN1-217ENST00000489072 CDC27P30260 824 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 PPIGQ13427 754 aaKnown RBP eCLIP28.78■■■□□ 2.25e-19■■□□□ 12
HMGN1-217ENST00000489072 LAMC2Q13753 1193 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 FAM47CQ5HY64 1035 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 NFRKBQ6P4R8 1299 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 KCNV1Q6PIU1 500 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 BLOC1S2Q6QNY1 142 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 DHX37Q8IY37 1157 aaKnown RBP28.78■■■□□ 2.2
HMGN1-217ENST00000489072 TMEM199Q8N511 208 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 KAT2BQ92831 832 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 PSTPIP2Q9H939 334 aa28.78■■■□□ 2.2
HMGN1-217ENST00000489072 GGPS1O95749 300 aa28.77■■■□□ 2.2
HMGN1-217ENST00000489072 APOBRQ0VD83 1088 aa28.77■■■□□ 2.2
HMGN1-217ENST00000489072 CELF3Q5SZQ8 465 aaKnown RBP28.77■■■□□ 2.2
HMGN1-217ENST00000489072 MYSM1Q5VVJ2 828 aa28.77■■■□□ 2.2
HMGN1-217ENST00000489072 HEATR3Q7Z4Q2 680 aa28.77■■■□□ 2.2
HMGN1-217ENST00000489072 PPTC7Q8NI37 304 aa28.77■■■□□ 2.2
HMGN1-217ENST00000489072 RNPC3Q96LT9 517 aaKnown RBP28.77■■■□□ 2.2
HMGN1-217ENST00000489072 INPP4AQ96PE3 977 aaPredicted RBP28.77■■■□□ 2.2
HMGN1-217ENST00000489072 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.77■■■□□ 2.24e-7■■■□□ 15.1
HMGN1-217ENST00000489072 TGFB3P10600 412 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 CYP2C9P11712 490 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 CASTP20810 708 aaKnown RBP28.76■■■□□ 2.19
HMGN1-217ENST00000489072 RPS6KB1P23443 525 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 RCAN1P53805 252 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 FGD1P98174 961 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 SEMA3FQ13275 785 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 DGKDQ16760 1214 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 UBE2SQ16763 222 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 WWC2Q6AWC2 1192 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 DEFB123Q8N688 67 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 BRF1Q92994 677 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 WNT8AQ9H1J5 351 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 BCAS3Q9H6U6 928 aa28.76■■■□□ 2.19
HMGN1-217ENST00000489072 CCL23P55773 120 aa28.75■■■□□ 2.19
HMGN1-217ENST00000489072 CHMP4BP1P59074 171 aa28.75■■■□□ 2.19
HMGN1-217ENST00000489072 TMEM240Q5SV17 173 aa28.75■■■□□ 2.19
HMGN1-217ENST00000489072 PCNX4Q63HM2 1172 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms