RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PPP1R9AQ9ULJ8 1098 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 GJA5P36382 358 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 TXLNAP40222 546 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CCZ1BP86790 482 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CCZ1P86791 482 aaPredicted RBP13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CALCRLQ16602 461 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 LDLRAD1Q5T700 205 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 ERO1BQ86YB8 467 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 IGSF22Q8N9C0 903 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 TRIML1Q8N9V2 468 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CRYGNQ8WXF5 182 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 STAMQ92783 540 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 C12orf42Q96LP6 360 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 AK8Q96MA6 479 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 HSD3B7Q9H2F3 369 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 PARP14Q460N5 1801 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 IKBKBO14920 756 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CTIFO43310 598 aaKnown RBP13.68□□□□□ -0.22
HDAC6-230ENST00000488543 CELF2O95319 508 aaKnown RBP13.68□□□□□ -0.22
HDAC6-230ENST00000488543 PPATQ06203 517 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 MKRN3Q13064 507 aaKnown RBP13.68□□□□□ -0.22
HDAC6-230ENST00000488543 MMTAG2Q9BU76 263 aaKnown RBP13.68□□□□□ -0.22
HDAC6-230ENST00000488543 SLC38A10Q9HBR0 1119 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 HOMER2Q9NSB8 354 aa13.68□□□□□ -0.22
HDAC6-230ENST00000488543 SPDYE5A6NIY4 337 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 VWA5AO00534 786 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 SMC2O95347 1197 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 TECP42680 631 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 FXR2P51116 673 aaKnown RBP eCLIP13.67□□□□□ -0.223e-6■■■■□ 23.4
HDAC6-230ENST00000488543 AP3B2Q13367 1082 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CST9Q5W186 159 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 GADL1Q6ZQY3 521 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CATSPERGQ6ZRH7 1159 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 ANKRD7Q92527 254 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CCDC34Q96HJ3 373 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 MBOAT7Q96N66 472 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 ZHX1Q9UKY1 873 aaPredicted RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 GTPBP6O43824 516 aaPredicted RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 ITGBL1O95965 494 aaPredicted RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CFBP00751 764 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 UBA7P41226 1012 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 STAT6P42226 847 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 SH3D19Q5HYK7 790 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CEP135Q66GS9 1140 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 POTEEQ6S8J3 1075 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CABP7Q86V35 215 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 RBM46Q8TBY0 533 aaKnown RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 HAS1Q92839 578 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 SLC10A4Q96EP9 437 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 MRFAP1L1Q96HT8 127 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 UIMC1Q96RL1 719 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 XPO4Q9C0E2 1151 aaKnown RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 IFNKQ9P0W0 207 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 DDX25Q9UHL0 483 aaKnown RBP13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CCPG1Q9ULG6 757 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 RIPK3Q9Y572 518 aa13.67□□□□□ -0.22
HDAC6-230ENST00000488543 CYP3A7-CYP3A51PA0A087WV96 503 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 SMTNL1A8MU46 457 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 GCFC2P16383 781 aaKnown RBP13.66□□□□□ -0.22
HDAC6-230ENST00000488543 CYP3A7P24462 503 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 CDC25BP30305 580 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 TXKP42681 527 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 GOLGA8FQ08AF8 430 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 GOLGA8DPQ0D2H9 430 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 CUL4BQ13620 913 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 COG2Q14746 738 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 RRAGBQ5VZM2 374 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 FCHSD1Q86WN1 690 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 MLKLQ8NB16 471 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 PAPPA2Q9BXP8 1791 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 BLZF1Q9H2G9 400 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 ICAM1P05362 532 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 ALAS1P13196 640 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 USP11P51784 963 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 HSP90AA4PQ58FG1 418 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 TMC6Q7Z403 805 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 GSDMAQ96QA5 445 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 MED15Q96RN5 788 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 GBA2Q9HCG7 927 aaPredicted RBP13.66□□□□□ -0.22
HDAC6-230ENST00000488543 PRDM4Q9UKN5 801 aa13.66□□□□□ -0.22
HDAC6-230ENST00000488543 PIK3CDO00329 1044 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 NFIBO00712 420 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 ATP1A3P13637 1013 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 PLCG1P19174 1290 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 DSG3P32926 999 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 MYL5Q02045 173 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 MUM1L1Q5H9M0 696 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 MCTP2Q6DN12 878 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 CCDC112Q8NEF3 446 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 PLIN2Q99541 437 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 NAP1L4Q99733 375 aaKnown RBP13.65□□□□□ -0.22
HDAC6-230ENST00000488543 A0A0G2JLL6 359 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-230ENST00000488543 SREBF1P36956 1147 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 ARHGAP4P98171 946 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 MOXD1Q6UVY6 613 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 PRRT2Q7Z6L0 340 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-230ENST00000488543 KBTBD4Q9NVX7 518 aa13.65□□□□□ -0.22
HDAC6-230ENST00000488543 RLFQ13129 1914 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 SPDYE16A6NNV3 312 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 FOSP01100 380 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms