RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 MRPS9P82933 396 aaKnown RBP16.04■□□□□ 0.16
SYNE1-226ENST00000488376 ARHGAP1Q07960 439 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 TRAF1Q13077 416 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 TTLL4Q14679 1199 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 ANKRD33Q7Z3H0 272 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 VSIG10LQ86VR7 867 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 BCAS3Q9H6U6 928 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 NCOA5Q9HCD5 579 aaKnown RBP16.04■□□□□ 0.16
SYNE1-226ENST00000488376 MAP3K20Q9NYL2 800 aaKnown RBP16.04■□□□□ 0.16
SYNE1-226ENST00000488376 NID2Q14112 1375 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 A0A0U1RQG5 324 aaPredicted RBP16.03■□□□□ 0.16
SYNE1-226ENST00000488376 B4DLN1 442 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 ARVCFO00192 962 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 MYL3P08590 195 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 CLTBP09497 229 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 FXR1P51114 621 aaKnown RBP eCLIP16.03■□□□□ 0.16
SYNE1-226ENST00000488376 MRPL12P52815 198 aaKnown RBP16.03■□□□□ 0.16
SYNE1-226ENST00000488376 PURAQ00577 322 aaKnown RBP16.03■□□□□ 0.16
SYNE1-226ENST00000488376 SP2Q02086 613 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 FBXL16Q8N461 479 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 SAMD3Q8N6K7 520 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 SMARCC2Q8TAQ2 1214 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 AFG1LQ8WV93 481 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 BADQ92934 168 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 PSTPIP2Q9H939 334 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 DDX41Q9UJV9 622 aaKnown RBP16.03■□□□□ 0.16
SYNE1-226ENST00000488376 LTBP2Q14767 1821 aa16.03■□□□□ 0.16
SYNE1-226ENST00000488376 A6NJR5 290 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 RBAK-RBAKDNI3L0D1 243 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 STXBP3O00186 592 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 PIK3CDO00329 1044 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 SOX1O00570 391 aaPredicted RBP16.02■□□□□ 0.16
SYNE1-226ENST00000488376 NKRFO15226 690 aaKnown RBP eCLIP16.02■□□□□ 0.16
SYNE1-226ENST00000488376 PDIA3P30101 505 aaKnown RBP16.02■□□□□ 0.16
SYNE1-226ENST00000488376 CCND2P30279 289 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 RCAN1P53805 252 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 ITGA7Q13683 1181 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 FAM126BQ8IXS8 530 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 SLC43A3Q8NBI5 491 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 RTEL1Q9NZ71 1219 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 CYP46A1Q9Y6A2 500 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 MRVI1Q9Y6F6 885 aa16.02■□□□□ 0.16
SYNE1-226ENST00000488376 DTNBO60941 627 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 GH1P01241 217 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 BMP8BP34820 402 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 CPT1AP50416 773 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 EVCP57679 992 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 CCT2P78371 535 aaKnown RBP16.01■□□□□ 0.15
SYNE1-226ENST00000488376 SEMA3FQ13275 785 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 NTRK3Q16288 839 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 PHKBQ93100 1093 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 PGBD1Q96JS3 809 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 TOX2Q96NM4 488 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 TM6SF1Q9BZW5 370 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 UBE2OQ9C0C9 1292 aaKnown RBP16.01■□□□□ 0.15
SYNE1-226ENST00000488376 TRPV6Q9H1D0 765 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 PRKAG2Q9UGJ0 569 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 TELO2Q9Y4R8 837 aa16.01■□□□□ 0.15
SYNE1-226ENST00000488376 DCDC2CA8MYV0 355 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 KIAA0355O15063 1070 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 ZEB2O60315 1214 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 MMP3P08254 477 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 UBA1P22314 1058 aaKnown RBP16■□□□□ 0.15
SYNE1-226ENST00000488376 EPHB4P54760 987 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 NAPAP54920 295 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 PKN1Q16512 942 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 CUL5Q93034 780 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 TMEM39AQ9NV64 488 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 TMEM260Q9NX78 707 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 TBX21Q9UL17 535 aa16■□□□□ 0.15
SYNE1-226ENST00000488376 B4GALT4O60513 344 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 CABYRO75952 493 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 CD4P01730 458 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 NBPF20Q3BBV1 942 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 KAT2BQ92831 832 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 INPP4AQ96PE3 977 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-226ENST00000488376 LBHD1Q9BQE6 289 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-226ENST00000488376 MTG1Q9BT17 334 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-226ENST00000488376 PDRG1Q9NUG6 133 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 POLR3EQ9NVU0 708 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 BARHL2Q9NY43 387 aa15.99■□□□□ 0.15
SYNE1-226ENST00000488376 UMODL1Q5DID0 1318 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 TRIOBPQ9H2D6 2365 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 GGPS1O95749 300 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 ZNF286BP0CG31 522 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 CHMP4BP1P59074 171 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 STK3Q13188 491 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 PFKFB3Q16875 520 aaPredicted RBP15.98■□□□□ 0.15
SYNE1-226ENST00000488376 HSDL1Q3SXM5 330 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 C9orf50Q5SZB4 431 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 CELF3Q5SZQ8 465 aaKnown RBP15.98■□□□□ 0.15
SYNE1-226ENST00000488376 MYSM1Q5VVJ2 828 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 PCNX4Q63HM2 1172 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 PPP1R12CQ9BZL4 782 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 RIC8AQ9NPQ8 531 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 TRMT13Q9NUP7 481 aaKnown RBP15.98■□□□□ 0.15
SYNE1-226ENST00000488376 PCDHA6Q9UN73 950 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 PCDHA8Q9Y5H6 950 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 KIAA1217Q5T5P2 1943 aa15.98■□□□□ 0.15
SYNE1-226ENST00000488376 SMCO2A6NFE2 343 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms