RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	COL5A2	P05997	1499 aa	Predicted RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PPP1R3G	B7ZBB8	358 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758		H7C1D1	291 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EIF4A3	P38919	411 aa	Known RBP	13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ARHGAP25	P42331	645 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DNM2	P50570	870 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	AMPD3	Q01432	767 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KRT79	Q5XKE5	535 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	REXO1	Q8N1G1	1221 aa	Known RBP	13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	LINC00116	Q8NCU8	138 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ROBO1	Q9Y6N7	1651 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PDE2A	O00408	941 aa	Predicted RBP	13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PLCG1	P19174	1290 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NR1D1	P20393	614 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GSTO1	P78417	241 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	UBE2S	Q16763	222 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DPP8	Q6V1X1	898 aa	Predicted RBP	13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	OR2W6P	Q8NHA6	318 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	HYOU1	Q9Y4L1	999 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EIF3H	O15372	352 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GNA11	P29992	359 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DCC	P43146	1447 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KCTD1	Q719H9	257 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SPATA4	Q8NEY3	305 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	WDR66	Q8TBY9	1149 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TBCK	Q8TEA7	893 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RPGRIP1	Q96KN7	1286 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DPH5	Q9H2P9	285 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RWDD2A	Q9UIY3	292 aa		13.61	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CHMP2A	O43633	222 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PPP1R12B	O60237	982 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CTNNA1	P35221	906 aa	Known RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TROAP	Q12815	778 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CFAP221	Q4G0U5	840 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SV2B	Q7L1I2	683 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	FAM114A1	Q8IWE2	563 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SHISA4	Q96DD7	197 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RAB34	Q9BZG1	259 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TMEM60	Q9H2L4	133 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TCEAL9	Q9UHQ7	104 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GGA1	Q9UJY5	639 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CLTA	P09496	248 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EPHB4	P54760	987 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PAK2	Q13177	524 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PPP1R7	Q15435	360 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KRT71	Q3SY84	523 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ZNF658	Q5TYW1	1059 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NOX5	Q96PH1	765 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SPAG5	Q96R06	1193 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TSG101	Q99816	390 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ATP8A2	Q9NTI2	1148 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	STIM2	Q9P246	746 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	AFDN	P55196	1824 aa	Known RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	POTEM	A6NI47	508 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KCNK3	O14649	394 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	BUB1B	O60566	1050 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DDAH1	O94760	285 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MDM2	Q00987	491 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CALCRL	Q16602	461 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RPAIN	Q86UA6	219 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TCP11	Q8WWU5	503 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CNKSR2	Q8WXI2	1034 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PHLPP1	O60346	1717 aa		13.6	□□□□□ -0.23
SHROOM3-208	ENST00000486758	WDR19	Q8NEZ3	1342 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	STK36	Q9NRP7	1315 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NKRF	O15226	690 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MYZAP	P0CAP1	466 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	FCER1A	P12319	257 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TRAPPC11	Q7Z392	1133 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KIAA0825	Q8IV33	1275 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KAT2B	Q92831	832 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TMEM47	Q9BQJ4	181 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CAPN6	Q9Y6Q1	641 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CARS	P49589	748 aa	Known RBP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GFPT1	Q06210	699 aa	Predicted RBP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MAEA	Q7L5Y9	396 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ZIM3	Q96PE6	472 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PCDHA4	Q9UN74	947 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	VIM	P08670	466 aa	Known RBP	13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SLURP2	P0DP57	97 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KIF11	P52732	1056 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	HERVK_113	P62684	666 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PPP2R5B	Q15173	497 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PHF20	Q9BVI0	1012 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	UBXN6	Q9BZV1	441 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SUFU	Q9UMX1	484 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PNPLA7	Q6ZV29	1317 aa		13.59	□□□□□ -0.23
SHROOM3-208	ENST00000486758	OR52Z1	P0C646	297 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	IFNAR2	P48551	515 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MAP2K1	Q02750	393 aa	Predicted RBP	13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	LLGL1	Q15334	1064 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PKN1	Q16512	942 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TXNRD1	Q16881	649 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ARHGEF1	Q92888	912 aa	Known RBP	13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RNPC3	Q96LT9	517 aa	Known RBP	13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RIOK1	Q9BRS2	568 aa	Known RBP	13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MXD3	Q9BW11	206 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	AP1M1	Q9BXS5	423 aa		13.58	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms