RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TMEM199Q8N511 208 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 DEFB123Q8N688 67 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 RRP36Q96EU6 259 aaKnown RBP19.17■□□□□ 0.66
TRIM54-203ENST00000485306 MTG1Q9BT17 334 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-203ENST00000485306 CYP46A1Q9Y6A2 500 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 LAMA3Q16787 3333 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 OPLAHO14841 1288 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 GH1P01241 217 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 CASTP20810 708 aaKnown RBP19.16■□□□□ 0.66
TRIM54-203ENST00000485306 PSMC6P62333 389 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 PURAQ00577 322 aaKnown RBP19.16■□□□□ 0.66
TRIM54-203ENST00000485306 PPIGQ13427 754 aaKnown RBP eCLIP19.16■□□□□ 0.66
TRIM54-203ENST00000485306 SYNE3Q6ZMZ3 975 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 SGMS1Q86VZ5 419 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 TCEANC2Q96MN5 208 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 SPZ1Q9BXG8 430 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 SEC63Q9UGP8 760 aaKnown RBP19.16■□□□□ 0.66
TRIM54-203ENST00000485306 SLC12A7Q9Y666 1083 aa19.16■□□□□ 0.66
TRIM54-203ENST00000485306 KIAA1217Q5T5P2 1943 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 SUPT20HL2P0C7V6 817 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 RXRAP19793 462 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 HOXA13P31271 388 aaPredicted RBP19.15■□□□□ 0.66
TRIM54-203ENST00000485306 LY6KQ17RY6 165 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 CCDC62Q6P9F0 684 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 RUFY3Q7L099 469 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 PIBF1Q8WXW3 757 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 COPS5Q92905 334 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 KIF2CQ99661 725 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 GRIN2DO15399 1336 aa19.15■□□□□ 0.66
TRIM54-203ENST00000485306 ARIH2O95376 493 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 MYCLP12524 364 aaPredicted RBP19.14■□□□□ 0.65
TRIM54-203ENST00000485306 RPS6KB1P23443 525 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 KCNV1Q6PIU1 500 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 RAB11FIP4Q86YS3 637 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 FBXL16Q8N461 479 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 RNPC3Q96LT9 517 aaKnown RBP19.14■□□□□ 0.65
TRIM54-203ENST00000485306 PDCD2LQ9BRP1 358 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 PPP1R12CQ9BZL4 782 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 HIPK3Q9H422 1215 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 MRVI1Q9Y6F6 885 aa19.14■□□□□ 0.65
TRIM54-203ENST00000485306 PLEKHA8P1O95397 391 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 CCND2P30279 289 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 FAM109BQ6ICB4 259 aaPredicted RBP19.13■□□□□ 0.65
TRIM54-203ENST00000485306 VSIG10LQ86VR7 867 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 FCHSD1Q86WN1 690 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 MICU3Q86XE3 530 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 TRPV6Q9H1D0 765 aa19.13■□□□□ 0.65
TRIM54-203ENST00000485306 ALDH8A1Q9H2A2 487 aaPredicted RBP19.13■□□□□ 0.65
TRIM54-203ENST00000485306 DDX41Q9UJV9 622 aaKnown RBP19.13■□□□□ 0.65
TRIM54-203ENST00000485306 B4GALT4O60513 344 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 CPA1P15085 419 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 CSF2RAP15509 400 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 CYP2C18P33260 490 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 EPHB4P54760 987 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 SMAD3P84022 425 aaKnown RBP19.12■□□□□ 0.65
TRIM54-203ENST00000485306 LAMC2Q13753 1193 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 PGM5Q15124 567 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 NBPF20Q3BBV1 942 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 FAM47CQ5HY64 1035 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 NFRKBQ6P4R8 1299 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 SRBD1Q8N5C6 995 aaKnown RBP19.12■□□□□ 0.65
TRIM54-203ENST00000485306 FANCBQ8NB91 859 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 AFG1LQ8WV93 481 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 CUL5Q93034 780 aa19.12■□□□□ 0.65
TRIM54-203ENST00000485306 TGFB3P10600 412 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 PTPN11Q06124 597 aaPredicted RBP19.11■□□□□ 0.65
TRIM54-203ENST00000485306 ANKRD1Q15327 319 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 DGKDQ16760 1214 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 APOA5Q6Q788 366 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 Q7L0L9 218 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 DHX37Q8IY37 1157 aaKnown RBP19.11■□□□□ 0.65
TRIM54-203ENST00000485306 SMARCC2Q8TAQ2 1214 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 EMID1Q96A84 441 aaPredicted RBP19.11■□□□□ 0.65
TRIM54-203ENST00000485306 UPF3BQ9BZI7 483 aaKnown RBP19.11■□□□□ 0.65
TRIM54-203ENST00000485306 PDRG1Q9NUG6 133 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 BRPF3Q9ULD4 1205 aa19.11■□□□□ 0.65
TRIM54-203ENST00000485306 MYH7BA7E2Y1 1941 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 ST18O60284 1047 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 MMP3P08254 477 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 NEK4P51957 841 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 CHMP4BP1P59074 171 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 FGD1P98174 961 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 ARHGAP1Q07960 439 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 ZNF697Q5TEC3 545 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 PSRC1Q6PGN9 363 aaPredicted RBP19.1■□□□□ 0.65
TRIM54-203ENST00000485306 TMTC3Q6ZXV5 915 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 CMTR1Q8N1G2 835 aaKnown RBP19.1■□□□□ 0.65
TRIM54-203ENST00000485306 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.1■□□□□ 0.65
TRIM54-203ENST00000485306 NOC4LQ9BVI4 516 aaKnown RBP19.1■□□□□ 0.65
TRIM54-203ENST00000485306 AGXT2Q9BYV1 514 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 MTMR10Q9NXD2 777 aa19.1■□□□□ 0.65
TRIM54-203ENST00000485306 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.09■□□□□ 0.65
TRIM54-203ENST00000485306 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.09■□□□□ 0.65
TRIM54-203ENST00000485306 ZBTB43O43298 467 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 STAM2O75886 525 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 GNPTABQ3T906 1256 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 RPUSD2Q8IZ73 545 aaKnown RBP19.09■□□□□ 0.65
TRIM54-203ENST00000485306 IL23AQ9NPF7 189 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 TRMT13Q9NUP7 481 aaKnown RBP19.09■□□□□ 0.65
TRIM54-203ENST00000485306 RBM28Q9NW13 759 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms