RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ERCC3	P19447	782 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	UBA7	P41226	1012 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	FXR2	P51116	673 aa	Known RBP eCLIP	12.67	□□□□□ -0.38
APTX-223	ENST00000479656	TMEM266	Q2M3C6	531 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	ARHGEF16	Q5VV41	709 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	KRBA2	Q6ZNG9	492 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	ANKRD35	Q8N283	1001 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	IGSF22	Q8N9C0	903 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	CNNM3	Q8NE01	707 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	IL31RA	Q8NI17	732 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	SMCR8	Q8TEV9	937 aa	Predicted RBP	12.67	□□□□□ -0.38
APTX-223	ENST00000479656	ERCC4	Q92889	916 aa	Predicted RBP	12.67	□□□□□ -0.38
APTX-223	ENST00000479656	DHX58	Q96C10	678 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	PXMP2	Q9NR77	195 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	TLL2	Q9Y6L7	1015 aa		12.67	□□□□□ -0.38
APTX-223	ENST00000479656	CTAGE5	O15320	804 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	MSH4	O15457	936 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	TOMM70	O94826	608 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	MYCL	P12524	364 aa	Predicted RBP	12.66	□□□□□ -0.38
APTX-223	ENST00000479656	PDIA5	Q14554	519 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	PGM5	Q15124	567 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	CEP55	Q53EZ4	464 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	RBM43	Q6ZSC3	357 aa	Known RBP	12.66	□□□□□ -0.38
APTX-223	ENST00000479656	PLA2G4D	Q86XP0	818 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	ETNPPL	Q8TBG4	499 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	AK8	Q96MA6	479 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	MXRA8	Q9BRK3	442 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	PDCD2L	Q9BRP1	358 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	LRWD1	Q9UFC0	647 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	FBXO40	Q9UH90	709 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656		A0A0G2JMZ2	1700 aa		12.66	□□□□□ -0.38
APTX-223	ENST00000479656	TESPA1	A2RU30	521 aa	Predicted RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	POTEM	A6NI47	508 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	MEIS1	O00470	390 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	TBX3	O15119	743 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	SLC25A27	O95847	323 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	AR	P10275	920 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	TXLNA	P40222	546 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ERVK-9	P63128	1117 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ERVK-24	P63145	666 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	MRPS9	P82933	396 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	KARS	Q15046	597 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ZRSR1	Q15695	479 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	PCNX4	Q63HM2	1172 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	CABP7	Q86V35	215 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	SLFN12	Q8IYM2	578 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	PLIN2	Q99541	437 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	CCSER1	Q9C0I3	900 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ABT1	Q9ULW3	272 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	FRMPD4	Q14CM0	1322 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	FOXN1	O15353	648 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ACTN4	O43707	911 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ITGB5	P18084	799 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	CNTN2	Q02246	1040 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	ANKRD13C	Q8N6S4	541 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	NSUN6	Q8TEA1	469 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	FAM20A	Q96MK3	541 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	MMTAG2	Q9BU76	263 aa	Known RBP	12.65	□□□□□ -0.38
APTX-223	ENST00000479656	RAB34	Q9BZG1	259 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	WDR11	Q9BZH6	1224 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	MAF1	Q9H063	256 aa		12.65	□□□□□ -0.38
APTX-223	ENST00000479656	MANSC4	A6NHS7	340 aa	Predicted RBP	12.64	□□□□□ -0.39
APTX-223	ENST00000479656	TMEM88B	A6NKF7	163 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	NR3C2	P08235	984 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	SLC10A3	P09131	477 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	WDR78	Q5VTH9	848 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	IQUB	Q8NA54	791 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	GPRC5A	Q8NFJ5	357 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	RASSF8	Q8NHQ8	419 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	GTF3C2	Q8WUA4	911 aa	Predicted RBP	12.64	□□□□□ -0.39
APTX-223	ENST00000479656	NUDT12	Q9BQG2	462 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	FUCA2	Q9BTY2	467 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	CCDC39	Q9UFE4	941 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	UBIAD1	Q9Y5Z9	338 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	PFAS	O15067	1338 aa		12.64	□□□□□ -0.39
APTX-223	ENST00000479656	FAM155A	B1AL88	458 aa	Predicted RBP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	SLFN14	P0C7P3	912 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	GCLC	P48506	637 aa	Predicted RBP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	MDM2	Q00987	491 aa	Predicted RBP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	PNOC	Q13519	176 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	E2F4	Q16254	413 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	RRAGB	Q5VZM2	374 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	VSIG10L	Q86VR7	867 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	GRAMD1C	Q8IYS0	662 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	ZNF577	Q9BSK1	485 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	PORCN	Q9H237	461 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	TSPY26P	Q9H489	355 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	EFCC1	Q9HA90	598 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	JADE2	Q9NQC1	790 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	DISC1	Q9NRI5	854 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	RBBP6	Q7Z6E9	1792 aa	Known RBP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	POTEB2	H3BUK9	544 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	COPB2	P35606	906 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	AFM	P43652	599 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	KANK3	Q6NY19	840 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	SASS6	Q6UVJ0	657 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.63	□□□□□ -0.39
APTX-223	ENST00000479656	CEP57L1	Q8IYX8	460 aa		12.63	□□□□□ -0.39
APTX-223	ENST00000479656	STAM	Q92783	540 aa		12.63	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms