RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PPP2R3BQ9Y5P8 575 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 DOCK1Q14185 1865 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 CARNS1A5YM72 827 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 IQCA1LA6NCM1 817 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 CCDC69A6NI79 296 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 DDAH1O94760 285 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 HSP90AA1P07900 732 aaKnown RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 EPHX2P34913 555 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 DDIT3P35638 169 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 CTBSQ01459 385 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 SCRN1Q12765 414 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 STK3Q13188 491 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 RRP1BQ14684 758 aaKnown RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 LBRQ14739 615 aaKnown RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 SHROOM1Q2M3G4 852 aaPredicted RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 IFIT1BQ5T764 474 aaKnown RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 NFXL1Q6ZNB6 911 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 USP50Q70EL3 339 aaPredicted RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 DGKHQ86XP1 1220 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 RAB11FIP4Q86YS3 637 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 ZNF654Q8IZM8 581 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 CEP95Q96GE4 821 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 MYL10Q9BUA6 226 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 DEFB129Q9H1M3 183 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 SLKQ9H2G2 1235 aaPredicted RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 TAF1DQ9H5J8 278 aaPredicted RBP7.76□□□□□ -1.17
USP48-208ENST00000479177 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP48-208ENST00000479177 RRAGCQ9HB90 399 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 SLC12A7Q9Y666 1083 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 OTOFQ9HC10 1997 aa7.76□□□□□ -1.17
USP48-208ENST00000479177 GOLGA8AA7E2F4 631 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 C1QTNF9BB2RNN3 333 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 C2CD2LO14523 706 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 ATXN7O15265 892 aaPredicted RBP7.75□□□□□ -1.17
USP48-208ENST00000479177 ZBTB43O43298 467 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 CTDNEP1O95476 244 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 GUCY1A2P33402 732 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 MAP2K3P46734 347 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 METAP2P50579 478 aaKnown RBP eCLIP7.75□□□□□ -1.17
USP48-208ENST00000479177 JAG1P78504 1218 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 GRIN2CQ14957 1233 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 OCLNQ16625 522 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 CERKLQ49MI3 558 aaPredicted RBP7.75□□□□□ -1.17
USP48-208ENST00000479177 CAPN12Q6ZSI9 719 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 TMEM179Q6ZVK1 233 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 NLRP8Q86W28 1048 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 MICU3Q86XE3 530 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 CLEC10AQ8IUN9 316 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 TMTC2Q8N394 836 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 NSUN7Q8NE18 718 aaKnown RBP7.75□□□□□ -1.17
USP48-208ENST00000479177 EDARADDQ8WWZ3 215 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 NCOA5Q9HCD5 579 aaKnown RBP7.75□□□□□ -1.17
USP48-208ENST00000479177 MTMR4Q9NYA4 1195 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 NAP1L2Q9ULW6 460 aaPredicted RBP7.75□□□□□ -1.17
USP48-208ENST00000479177 PCDHGC4Q9Y5F7 938 aa7.75□□□□□ -1.17
USP48-208ENST00000479177 MYH6P13533 1939 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 ADM5C9JUS6 153 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 MPHOSPH10O00566 681 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 KHNYNO15037 678 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 JAK2O60674 1132 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 GH2P01242 217 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 MAPTP10636 758 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 TOP1P11387 765 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 RXRAP19793 462 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 CD33P20138 364 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 FGFR3P22607 806 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 CCT2P78371 535 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 TROAPQ12815 778 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 RTN1Q16799 776 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 ABCB5Q2M3G0 1257 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 NBPF12Q5TAG4 269 aaPredicted RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 MIGA2Q7L4E1 593 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 CATIPQ7Z7H3 387 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 CD163Q86VB7 1156 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 STAG2Q8N3U4 1231 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 SMARCC2Q8TAQ2 1214 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 DCPSQ96C86 337 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 HOOK2Q96ED9 719 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 TMEM47Q9BQJ4 181 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 LLPHQ9BRT6 129 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 CFHR5Q9BXR6 569 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 KAT14Q9H8E8 782 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 CWC22Q9HCG8 908 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 ZBTB21Q9ULJ3 1066 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 STX8Q9UNK0 236 aa7.74□□□□□ -1.17
USP48-208ENST00000479177 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 BAZ2BQ9UIF8 2168 aaKnown RBP7.74□□□□□ -1.17
USP48-208ENST00000479177 PTPDC1A2A3K4 754 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 TTLL1O95922 423 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CALM1P0DP23 149 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CALM2P0DP24 149 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CALM3P0DP25 149 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CDC27P30260 824 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CAP2P40123 477 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 ICA1Q05084 483 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 TNP2Q05952 138 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 GRM4Q14833 912 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 SEPT2Q15019 361 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 C1orf53Q5VUE5 145 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 PRAMEF18Q5VWM3 479 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms