RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FAM46AQ96IP4 442 aaKnown RBP8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 HINFPQ9BQA5 517 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 OSBPL5Q9H0X9 879 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 PICK1Q9NRD5 415 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 ZBTB40Q9NUA8 1239 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 TRIM17Q9Y577 477 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 KCNMB2Q9Y691 235 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 MYH7P12883 1935 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 SIPA1L1O43166 1804 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 CXCL11O14625 94 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 DHX15O43143 795 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 TLR2O60603 784 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 CTNND1O60716 968 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 PTPRAP18433 802 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 PTK7Q13308 1070 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 PDE3AQ14432 1141 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 ARHGEF6Q15052 776 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 C11orf91Q3C1V1 193 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 CRTC2Q53ET0 693 aaPredicted RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 TMED8Q6PL24 325 aaPredicted RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 OTOP1Q7RTM1 612 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 ANKRD23Q86SG2 305 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 TRIM42Q8IWZ5 723 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 CLASRPQ8N2M8 674 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 SH3RF3Q8TEJ3 882 aaPredicted RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 KIF1BPQ96EK5 621 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 NSUN5Q96P11 429 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 C7orf69Q9H7B7 122 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 IL1RAPL2Q9NP60 686 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 PIH1D3Q9NQM4 214 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 AATFQ9NY61 560 aaKnown RBP eCLIP8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 KCNK4Q9NYG8 393 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 LRFN2Q9ULH4 789 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 MGAMO43451 1857 aa8.27□□□□□ -1.09
CCDC88A-213ENST00000476903 RBBP6Q7Z6E9 1792 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 PDHXO00330 501 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 RAB11FIP3O75154 756 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 XYLBO75191 536 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 IDH1O75874 414 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 SOX18P35713 384 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 SOX10P56693 466 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 DPYDQ12882 1025 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 KIF22Q14807 665 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 RNF43Q68DV7 783 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 FASTKD5Q7L8L6 764 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 ADGRA1Q86SQ6 560 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 CERS3Q8IU89 383 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 SIRT2Q8IXJ6 389 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 DHX36Q9H2U1 1008 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 PI4KBQ9UBF8 816 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 HERC5Q9UII4 1024 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 PTPN22Q9Y2R2 807 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 ZHX2Q9Y6X8 837 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 ZSWIM8A7E2V4 1837 aa8.26□□□□□ -1.09
CCDC88A-213ENST00000476903 LOC285556D6RIA3 1793 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 A0A0G2JLL6 359 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 HMX2A2RU54 273 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 IFIT2P09913 472 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 CYP7A1P22680 504 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 MAP3K12Q12852 859 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 MOGSQ13724 837 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 TTF1Q15361 905 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 C20orf194Q5TEA3 1177 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 ADAMTSL4Q6UY14 1074 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 PRRT2Q7Z6L0 340 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 MAGEB6Q8N7X4 407 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 TGFBRAP1Q8WUH2 860 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 PARK7Q99497 189 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 TFIP11Q9UBB9 837 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 AFG3L2Q9Y4W6 797 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 PPME1Q9Y570 386 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 MAFBQ9Y5Q3 323 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 NAV1Q8NEY1 1877 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 FLT1P17948 1338 aa8.25□□□□□ -1.09
CCDC88A-213ENST00000476903 TNRC18O15417 2968 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 FAM196BA6NMK8 535 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 GHRHP01286 108 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 HLA-DOAP06340 250 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 PSAPP07602 524 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 WEE1P30291 646 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 LACTBP83111 547 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 UVSSAQ2YD98 709 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 GADL1Q6ZQY3 521 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 KIAA1211Q6ZU35 1233 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 MAPKAPK5Q8IW41 473 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 ANTXR1Q9H6X2 564 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 SLC45A1Q9Y2W3 748 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 MYH8P13535 1937 aa8.24□□□□□ -1.09
CCDC88A-213ENST00000476903 KIAA0100Q14667 2235 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 DDX60LQ5H9U9 1706 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 TRIM75PA6NK02 468 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 CAP2P40123 477 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 USP5P45974 858 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 PRMT2P55345 433 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 DYNLL1P63167 89 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 CAP1Q01518 475 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 C17orf99Q6UX52 265 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 FOXP4Q8IVH2 680 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms