RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CCDC62Q6P9F0 684 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 RNF180Q86T96 592 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 CUL5Q93034 780 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 MPHOSPH6Q99547 160 aaKnown RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 RTEL1Q9NZ71 1219 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 VPS54Q9P1Q0 977 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 PCDHA6Q9UN73 950 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 PCDHA8Q9Y5H6 950 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 KBTBD13C9JR72 458 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 hCG_1984214I3L0E3 225 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 CD2BP2O95400 341 aaKnown RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 TXNP10599 105 aaKnown RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 FDPSP14324 419 aaKnown RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 CST5P28325 142 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 ADCY7P51828 1080 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 NKX3-2P78367 333 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 AKAP17AQ02040 695 aaKnown RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 LRRC26Q2I0M4 334 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 ZNF713Q8N859 430 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 SCFD2Q8WU76 684 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 GTF3C6Q969F1 213 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 TBC1D32Q96NH3 1257 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 ZMYND12Q9H0C1 365 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 BCAS3Q9H6U6 928 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 GJB4Q9NTQ9 266 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 DDX41Q9UJV9 622 aaKnown RBP11.13□□□□□ -0.63
HDAC3-208ENST00000476739 PHF24Q9UPV7 400 aa11.13□□□□□ -0.63
HDAC3-208ENST00000476739 TNRC18O15417 2968 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-208ENST00000476739 A0A1W2PQ45 241 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-208ENST00000476739 A0A1W2PQY0 241 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 SORBS3O60504 671 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 ASGR1P07306 291 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 CCND2P30279 289 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 ACLYP53396 1101 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 SP2Q02086 613 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 SEMA3FQ13275 785 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 TTLL4Q14679 1199 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 GNASQ5JWF2 1037 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 JAKMIP3Q5VZ66 844 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 TRIM22Q8IYM9 498 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 NSUN7Q8NE18 718 aaKnown RBP11.12□□□□□ -0.63
HDAC3-208ENST00000476739 OR6J1Q8NGC5 347 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 RASGRP4Q8TDF6 673 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 DPF3Q92784 378 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 TSHZ2Q9NRE2 1034 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 RBM27Q9P2N5 1060 aaKnown RBP11.12□□□□□ -0.63
HDAC3-208ENST00000476739 LIMCH1Q9UPQ0 1083 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 Q9Y3F1 56 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 MRVI1Q9Y6F6 885 aa11.12□□□□□ -0.63
HDAC3-208ENST00000476739 MYH7BA7E2Y1 1941 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 DOCK5Q9H7D0 1870 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 PDE4DIPQ5VU43 2346 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 ESYT2A0FGR8 921 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 SPDYE3A6NKU9 549 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 JAK2O60674 1132 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 DEXIO95424 95 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 ITGB5P18084 799 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 ARHGAP1Q07960 439 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 RABEP1Q15276 862 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 NPY5RQ15761 445 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 FSCN1Q16658 493 aaKnown RBP11.11□□□□□ -0.63
HDAC3-208ENST00000476739 PCNX4Q63HM2 1172 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 CPLX2Q6PUV4 134 aaKnown RBP11.11□□□□□ -0.63
HDAC3-208ENST00000476739 CXCL17Q6UXB2 119 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 SLC39A5Q6ZMH5 540 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 CYP2W1Q8TAV3 490 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 INPP4AQ96PE3 977 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-208ENST00000476739 TSEN34Q9BSV6 310 aaKnown RBP11.11□□□□□ -0.63
HDAC3-208ENST00000476739 HTATIP2Q9BUP3 242 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 ANO3Q9BYT9 981 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 AP5M1Q9H0R1 490 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 UPF2Q9HAU5 1272 aaKnown RBP11.11□□□□□ -0.63
HDAC3-208ENST00000476739 SPC25Q9HBM1 224 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 KCNJ14Q9UNX9 436 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 TELO2Q9Y4R8 837 aa11.11□□□□□ -0.63
HDAC3-208ENST00000476739 MOXD2PA6NHM9 499 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 SPATA31C2B4DYI2 1134 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 NKRFO15226 690 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC3-208ENST00000476739 EDIL3O43854 480 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 CDKL5O76039 1030 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 UBA1P22314 1058 aaKnown RBP11.1□□□□□ -0.63
HDAC3-208ENST00000476739 ICAM3P32942 547 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 PSMC6P62333 389 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 SNX17Q15036 470 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 TRIM60Q495X7 471 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 CCDC83Q8IWF9 413 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 C7orf61Q8IZ16 206 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 PPP1R13LQ8WUF5 828 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 AFG1LQ8WV93 481 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 C6orf50Q9HD87 102 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 SH3GLB2Q9NR46 395 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 ORC3Q9UBD5 711 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-208ENST00000476739 UBIAD1Q9Y5Z9 338 aa11.1□□□□□ -0.63
HDAC3-208ENST00000476739 GRIN2DO15399 1336 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 STK36Q9NRP7 1315 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 A6NJR5 290 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 H0YGN5 161 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 M0R2N6 131 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 EVI5O60447 810 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 ATP9AO75110 1047 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms