RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DNERQ8NFT8 737 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 WWC2-AS2Q96NR7 200 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 METTL5Q9NRN9 209 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 SRRDQ9UH36 339 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 WASF3Q9UPY6 502 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 EMC9Q9Y3B6 208 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 TRBV23OR9-2A0A075B6M9 112 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 FPR2P25090 351 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 PAK2Q13177 524 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 CCDC103Q8IW40 242 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 TTLL6Q8N841 843 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 NPLOC4Q8TAT6 608 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 SH3RF3Q8TEJ3 882 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 USP33Q8TEY7 942 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 FBXL7Q9UJT9 491 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 TSC22D4Q9Y3Q8 395 aa6.12□□□□□ -1.43
CCDC88A-212ENST00000474059 SLC6A11P48066 632 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 KIAA2012Q0VF49 1180 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 R3HDM1Q15032 1099 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 PKN3Q6P5Z2 889 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 FAM169BQ8N8A8 192 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 FRS2Q8WU20 508 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 SHDQ96IW2 340 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 YTHDC1Q96MU7 727 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 ZNF747Q9BV97 191 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 PCDH18Q9HCL0 1135 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 TMEFF2Q9UIK5 374 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 EFR3BQ9Y2G0 817 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 SLC12A7Q9Y666 1083 aa6.11□□□□□ -1.43
CCDC88A-212ENST00000474059 C22orf46C9J442 243 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 OVOL3O00110 214 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 LAMTOR5O43504 91 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 KCNH1O95259 989 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 EIF6P56537 245 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 COL9A2Q14055 689 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 METTL16Q86W50 562 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 RASGRP4Q8TDF6 673 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 SEC14L1Q92503 715 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 MRGPRX3Q96LB0 322 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 AKT3Q9Y243 479 aa6.1□□□□□ -1.43
CCDC88A-212ENST00000474059 C9orf118A6NHY6 69 aa6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 MLLT6P55198 1093 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 BORAQ6PGQ7 559 aa6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 RIOX2Q8IUF8 465 aa6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 ZCCHC14Q8WYQ9 949 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 LCORQ96JN0 433 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 PTPN18Q99952 460 aa6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 X6R8D5 127 aa6.09□□□□□ -1.43
CCDC88A-212ENST00000474059 ANKRD34BA5PLL1 514 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 RECKO95980 971 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 CASP7P55210 303 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 GTF2IRD2BQ6EKJ0 949 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 KIAA1211LQ6NV74 962 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 GLB1LQ6UWU2 654 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 GTF2IRD2Q86UP8 949 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 ZFPM1Q8IX07 1006 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 CHST13Q8NET6 341 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 IGDCC4Q8TDY8 1250 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 ZSWIM3Q96MP5 696 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 KLC2Q9H0B6 622 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 AP5M1Q9H0R1 490 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 SUGT1Q9Y2Z0 365 aa6.08□□□□□ -1.44
CCDC88A-212ENST00000474059 ZNF536O15090 1300 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 TBX1O43435 398 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 EPHB4P54760 987 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 MILR1Q7Z6M3 343 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 TRIM59Q8IWR1 403 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 KREMEN2Q8NCW0 462 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 CRBNQ96SW2 442 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 MEGF9Q9H1U4 602 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 NKX2-4Q9H2Z4 354 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 BTG4Q9NY30 223 aa6.07□□□□□ -1.44
CCDC88A-212ENST00000474059 COL6A1P12109 1028 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 ZC3H18Q86VM9 953 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 ARRDC4Q8NCT1 418 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 BVESQ8NE79 360 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 OR6P1Q8NGX9 317 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 MENTQ9BUN1 341 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 MRIQ9BWK5 157 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 CYP26B1Q9NR63 512 aa6.06□□□□□ -1.44
CCDC88A-212ENST00000474059 TCRBV5S2A0A599 114 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 PATE3B3GLJ2 98 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 IL13P35225 146 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 BCL6P41182 706 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 HMGA2P52926 109 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 MROH9Q5TGP6 573 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 VHLLQ6RSH7 139 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 FAM124AQ86V42 546 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 PCED1AQ9H1Q7 454 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 ZNF652Q9Y2D9 606 aa6.05□□□□□ -1.44
CCDC88A-212ENST00000474059 CYR61O00622 381 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 TADA3O75528 432 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 LRG1P02750 347 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 GJA8P48165 433 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 TESK1Q15569 626 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 DENND5AQ6IQ26 1287 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 ZNF585AQ6P3V2 769 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 PROSER1Q86XN7 944 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 ZNF654Q8IZM8 581 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 KISS1RQ969F8 398 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms