RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CCDC148Q8NFR7 591 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 GTF3C6Q969F1 213 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 ZSCAN31Q96LW9 406 aaPredicted RBP17.54■□□□□ 0.4
SDC3-203ENST00000471567 AP5M1Q9H0R1 490 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 EHMT1Q9H9B1 1298 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 C6orf50Q9HD87 102 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 STK36Q9NRP7 1315 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 LARGE1O95461 756 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 MYCNP04198 464 aaPredicted RBP17.53■□□□□ 0.4
SDC3-203ENST00000471567 C6orf222P0C671 652 aaPredicted RBP17.53■□□□□ 0.4
SDC3-203ENST00000471567 TXNP10599 105 aaKnown RBP17.53■□□□□ 0.4
SDC3-203ENST00000471567 GNA11P29992 359 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 AP3B2Q13367 1082 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 PCNX4Q63HM2 1172 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 CCDC62Q6P9F0 684 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 KCNV1Q6PIU1 500 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 SEPT14Q6ZU15 432 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 TLK2Q86UE8 772 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 PCSK9Q8NBP7 692 aaKnown RBP17.53■□□□□ 0.4
SDC3-203ENST00000471567 IL31RAQ8NI17 732 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 PCDHA6Q9UN73 950 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 PHF24Q9UPV7 400 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 PCDHA8Q9Y5H6 950 aa17.53■□□□□ 0.4
SDC3-203ENST00000471567 MOXD2PA6NHM9 499 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 DYNC1LI2O43237 492 aaPredicted RBP17.52■□□□□ 0.4
SDC3-203ENST00000471567 PPFIA3O75145 1194 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 CTDNEP1O95476 244 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 CLK2P49760 499 aaKnown RBP17.52■□□□□ 0.4
SDC3-203ENST00000471567 GNASQ5JWF2 1037 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 CCSAPQ6IQ19 270 aaPredicted RBP17.52■□□□□ 0.4
SDC3-203ENST00000471567 NECAB1Q8N987 351 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 BICD2Q8TD16 824 aa17.52■□□□□ 0.4
SDC3-203ENST00000471567 CTAGE5O15320 804 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 ST18O60284 1047 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 RGS20O76081 388 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 TGFB3P10600 412 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 MRPS9P82933 396 aaKnown RBP17.51■□□□□ 0.39
SDC3-203ENST00000471567 KCNA10Q16322 511 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 GNPTABQ3T906 1256 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 TMEM63BQ5T3F8 832 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 WASF1Q92558 559 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 INPP4AQ96PE3 977 aaPredicted RBP17.51■□□□□ 0.39
SDC3-203ENST00000471567 SENP6Q9GZR1 1112 aaPredicted RBP17.51■□□□□ 0.39
SDC3-203ENST00000471567 SH2B1Q9NRF2 756 aaPredicted RBP17.51■□□□□ 0.39
SDC3-203ENST00000471567 VPS54Q9P1Q0 977 aa17.51■□□□□ 0.39
SDC3-203ENST00000471567 DDX41Q9UJV9 622 aaKnown RBP17.51■□□□□ 0.39
SDC3-203ENST00000471567 MYADML2A6NDP7 307 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 ZEB2O60315 1214 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 ARIH2O95376 493 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 ICAM3P32942 547 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 ACLYP53396 1101 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 FSCN1Q16658 493 aaKnown RBP17.5■□□□□ 0.39
SDC3-203ENST00000471567 GALNT17Q6IS24 598 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 REXO1Q8N1G1 1221 aaKnown RBP17.5■□□□□ 0.39
SDC3-203ENST00000471567 ANO3Q9BYT9 981 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 MRVI1Q9Y6F6 885 aa17.5■□□□□ 0.39
SDC3-203ENST00000471567 KIAA1217Q5T5P2 1943 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 GH1P01241 217 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 XBP1P17861 261 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 NLRP5P59047 1200 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 LY6KQ17RY6 165 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 BRDTQ58F21 947 aaPredicted RBP17.49■□□□□ 0.39
SDC3-203ENST00000471567 NLRX1Q86UT6 975 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 NSUN7Q8NE18 718 aaKnown RBP17.49■□□□□ 0.39
SDC3-203ENST00000471567 OR6J1Q8NGC5 347 aa17.49■□□□□ 0.39
SDC3-203ENST00000471567 ORC3Q9UBD5 711 aaPredicted RBP17.49■□□□□ 0.39
SDC3-203ENST00000471567 A0A1W2PQ45 241 aaPredicted RBP17.48■□□□□ 0.39
SDC3-203ENST00000471567 A0A1W2PQY0 241 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 SPATA31C2B4DYI2 1134 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 FIBPO43427 364 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 CABYRO75952 493 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 ASGR1P07306 291 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 SREBF1P36956 1147 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 MCM2P49736 904 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 CPT1AP50416 773 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 IRX5P78411 483 aaPredicted RBP17.48■□□□□ 0.39
SDC3-203ENST00000471567 BEX3Q00994 111 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 JAKMIP3Q5VZ66 844 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 DPF3Q92784 378 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 COPS5Q92905 334 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 EMID1Q96A84 441 aaPredicted RBP17.48■□□□□ 0.39
SDC3-203ENST00000471567 GPRASP2Q96D09 838 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 LLPHQ9BRT6 129 aaKnown RBP17.48■□□□□ 0.39
SDC3-203ENST00000471567 TMEM260Q9NX78 707 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 RTEL1Q9NZ71 1219 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 UBIAD1Q9Y5Z9 338 aa17.48■□□□□ 0.39
SDC3-203ENST00000471567 ELP1O95163 1332 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 A6NJR5 290 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 MAFGO15525 162 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 KPNA6O60684 536 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 FDPSP14324 419 aaKnown RBP17.47■□□□□ 0.39
SDC3-203ENST00000471567 PTGS1P23219 599 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 ARHGAP1Q07960 439 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 ST3GAL1Q11201 340 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 LAMC2Q13753 1193 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 C1orf53Q5VUE5 145 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 SLC39A5Q6ZMH5 540 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 DAGLBQ8NCG7 672 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 FERMT2Q96AC1 680 aa17.47■□□□□ 0.39
SDC3-203ENST00000471567 ZFP91Q96JP5 570 aaPredicted RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms