RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 NCOR1O75376 2440 aa10.57□□□□□ -0.72
SF3A1-206ENST00000471037 TRANK1O15050 2925 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 KIF28PB7ZC32 967 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 RFXAPO00287 272 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 ARHGEF15O94989 841 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 PARNO95453 639 aaKnown RBP10.56□□□□□ -0.72
SF3A1-206ENST00000471037 GH1P01241 217 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 MMP3P08254 477 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 KCNQ1P51787 676 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 HAND2P61296 217 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 ARHGAP1Q07960 439 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 PTGISQ16647 500 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 USH1GQ495M9 461 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 PPP1R13LQ8WUF5 828 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 ESR2Q92731 530 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 KAT2BQ92831 832 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 DSCC1Q9BVC3 393 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 C1QTNF1Q9BXJ1 281 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 USP26Q9BXU7 913 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 FTOQ9C0B1 505 aaKnown RBP eCLIP10.56□□□□□ -0.72
SF3A1-206ENST00000471037 LSG1Q9H089 658 aaKnown RBP10.56□□□□□ -0.72
SF3A1-206ENST00000471037 BDP1A6H8Y1 2624 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 ABCB11O95342 1321 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 NEDD4P46934 1319 aa10.56□□□□□ -0.72
SF3A1-206ENST00000471037 CXCL10P02778 98 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 GOLGA8HP0CJ92 632 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 SELPP16109 830 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 KCNJ6P48051 423 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 WDR5P61964 334 aaKnown RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 GPNMBQ14956 572 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 SKIV2LQ15477 1246 aaKnown RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 CDC37Q16543 378 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 CCDC178Q5BJE1 867 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 PNMA1Q8ND90 353 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 SYTL5Q8TDW5 730 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 NSUN6Q8TEA1 469 aaKnown RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 AFG1LQ8WV93 481 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 ARNTL2Q8WYA1 636 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 ANKS1AQ92625 1134 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 EMID1Q96A84 441 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 NECAB3Q96P71 396 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 IWS1Q96ST2 819 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 CERS4Q9HA82 394 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 COL20A1Q9P218 1284 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 GTF2IRD1Q9UHL9 959 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 U3KPZ7 1027 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 PRRC2BQ5JSZ5 2229 aaKnown RBP10.55□□□□□ -0.72
SF3A1-206ENST00000471037 REV3LO60673 3130 aa10.55□□□□□ -0.72
SF3A1-206ENST00000471037 PTPRSQ13332 1948 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 COL4A4P53420 1690 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-206ENST00000471037 LAMA4Q16363 1823 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 TLL1O43897 1013 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 LPXNO60711 386 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 CASTP20810 708 aaKnown RBP10.54□□□□□ -0.72
SF3A1-206ENST00000471037 PTH1RQ03431 593 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 GRB10Q13322 594 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 STXBP2Q15833 593 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 LY6KQ17RY6 165 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 ASPRV1Q53RT3 343 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 KRT40Q6A162 431 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 GDF6Q6KF10 455 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-206ENST00000471037 CNKSR3Q6P9H4 555 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 SEPT14Q6ZU15 432 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 LRRC8DQ7L1W4 858 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 IQCA1Q86XH1 822 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 MCF2L2Q86YR7 1114 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 TBC1D5Q92609 795 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 DHX38Q92620 1227 aaKnown RBP10.54□□□□□ -0.72
SF3A1-206ENST00000471037 MAP4K1Q92918 833 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 TBC1D32Q96NH3 1257 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 TAAR1Q96RJ0 339 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 ZKSCAN3Q9BRR0 538 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 C22orf23Q9BZE7 217 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 UBA5Q9GZZ9 404 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 CPVLQ9H3G5 476 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 LMCD1Q9NZU5 365 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 RAPGEFL1Q9UHV5 662 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 DDX41Q9UJV9 622 aaKnown RBP10.54□□□□□ -0.72
SF3A1-206ENST00000471037 TET1Q8NFU7 2136 aa10.54□□□□□ -0.72
SF3A1-206ENST00000471037 HAS3O00219 553 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 ZNF213O14771 459 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 KDM4AO75164 1064 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 F2P00734 622 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 HOXD8P13378 290 aaPredicted RBP10.53□□□□□ -0.72
SF3A1-206ENST00000471037 PLA2G5P39877 138 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 RBM25P49756 843 aaKnown RBP10.53□□□□□ -0.72
SF3A1-206ENST00000471037 GHRHRQ02643 423 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 DGKDQ16760 1214 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 QRICH1Q2TAL8 776 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 SPRED2Q7Z698 418 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 ADGRF4Q8IZF3 695 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 HLA-CQ95604 372 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 ZSCAN10Q96SZ4 725 aaPredicted RBP10.53□□□□□ -0.72
SF3A1-206ENST00000471037 RMDN3Q96TC7 470 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 KATNAL1Q9BW62 490 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 KAT14Q9H8E8 782 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 CTNNA3Q9UI47 895 aa10.53□□□□□ -0.72
SF3A1-206ENST00000471037 MRPL11Q9Y3B7 192 aaKnown RBP10.53□□□□□ -0.72
SF3A1-206ENST00000471037 RBM8AQ9Y5S9 174 aaKnown RBP10.53□□□□□ -0.72
SF3A1-206ENST00000471037 KIAA1217Q5T5P2 1943 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms