RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 CSRNP1Q96S65 589 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 TMOD2Q9NZR1 351 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 FZD1Q9UP38 647 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 PCDHGC4Q9Y5F7 938 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 CDK5RAP2Q96SN8 1893 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 BNIP3LO60238 219 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 EPB42P16452 691 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 ZKSCAN1P17029 563 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 MCCP23508 829 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 SHMT1P34896 483 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 CDK8P49336 464 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 ANTXR2P58335 489 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 JAG1P78504 1218 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 FGD1P98174 961 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 CTBSQ01459 385 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 MAP1SQ66K74 1059 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 XKR5Q6UX68 686 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 C16orf86Q6ZW13 317 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 CYB5R4Q7L1T6 521 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 MIGA2Q7L4E1 593 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 CD163Q86VB7 1156 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 MB21D2Q8IYB1 491 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 JAKMIP1Q96N16 626 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 NEK1Q96PY6 1258 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 DHX36Q9H2U1 1008 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 ZSWIM5Q9P217 1185 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 PI4KBQ9UBF8 816 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 SERPINB13Q9UIV8 391 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 FNDC3AQ9Y2H6 1198 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 PITPNM2Q9BZ72 1349 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 COL2A1P02458 1487 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 BAZ2AQ9UIF9 1905 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 SSC5DA1L4H1 1573 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 P4HBP07237 508 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 CASTP20810 708 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 DGKGP49619 791 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 TNFAIP1Q13829 316 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 FAM47AQ5JRC9 791 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 RRP12Q5JTH9 1297 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 MFSD6Q6ZSS7 791 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 KRT26Q7Z3Y9 468 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 TTC6Q86TZ1 520 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 USP48Q86UV5 1035 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 PNMA8AQ86V59 439 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 APOBEC3FQ8IUX4 373 aaKnown RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 TTC16Q8NEE8 873 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 TTC14Q96N46 770 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 PSMG3-AS1Q96PY0 264 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 LRRC2Q9BYS8 371 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 GLIS2Q9BZE0 524 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-208ENST00000470268 TM6SF1Q9BZW5 370 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 EHD4Q9H223 541 aa5.57□□□□□ -1.52
SF3B1-208ENST00000470268 SIPA1L1O43166 1804 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 FOCADQ5VW36 1801 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 NAV1Q8NEY1 1877 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 ECM29Q5VYK3 1845 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 ORC4O43929 436 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 NMT2O60551 498 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 HLA-DOAP06340 250 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 RPS6KB1P23443 525 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 TNNI2P48788 182 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 NEK4P51957 841 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 EXOSC10Q01780 885 aaKnown RBP5.56□□□□□ -1.52
SF3B1-208ENST00000470268 TATDN1Q6P1N9 297 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 RUFY3Q7L099 469 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 FOXP4Q8IVH2 680 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-208ENST00000470268 NCOA7Q8NI08 942 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 DCPSQ96C86 337 aaKnown RBP5.56□□□□□ -1.52
SF3B1-208ENST00000470268 CEP63Q96MT8 703 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 ZKSCAN3Q9BRR0 538 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 IL17RBQ9NRM6 502 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 TOMM22Q9NS69 142 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 SCN4AP35499 1836 aa5.56□□□□□ -1.52
SF3B1-208ENST00000470268 UNCXA6NJT0 531 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 TRAF5O00463 557 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 RANBP6O60518 1105 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 FAM157BP0CG42 384 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 AKR1B1P15121 316 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 TFAP4Q01664 338 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PDE4BQ07343 736 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 TOB2Q14106 344 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 KRT32Q14532 448 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PDE12Q6L8Q7 609 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 BLOC1S2Q6QNY1 142 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 DHX32Q7L7V1 743 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CLEC10AQ8IUN9 316 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 AMOTL1Q8IY63 956 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CRACR2BQ8N4Y2 399 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 ZCCHC2Q9C0B9 1178 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 RNF41Q9H4P4 317 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 MKNK2Q9HBH9 465 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 KCNMB2Q9Y691 235 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PRC1O43663 620 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 SLC3A2P08195 630 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PCP11498 1178 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PSMA5P28066 241 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 ADH6P28332 368 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms