RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SUGCTQ9HAC7 445 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 RAVER2Q9HCJ3 691 aaKnown RBP6.39□□□□□ -1.39
PTPN4-209ENST00000469511 DCP1AQ9NPI6 582 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-209ENST00000469511 MYH7P12883 1935 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 ZFHX2Q9C0A1 2572 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 MAGEB6P1A0A0J9YX57 407 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 H3BQ06 376 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 CDK8P49336 464 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 DEFB103AP81534 67 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 TNFAIP2Q03169 654 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 PTK2Q05397 1052 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 PTCRAQ6ISU1 281 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 TAPT1Q6NXT6 567 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 NOL8Q76FK4 1167 aaKnown RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 RPUSD2Q8IZ73 545 aaKnown RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 STK11IPQ8N1F8 1099 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 MSL3Q8N5Y2 521 aaKnown RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 ALDH8A1Q9H2A2 487 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-209ENST00000469511 ABHD16BQ9H3Z7 469 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 ARMT1Q9H993 441 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 ARHGEF10LQ9HCE6 1279 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 GPR108Q9NPR9 543 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 MYH7BA7E2Y1 1941 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 CACNA1HO95180 2353 aa6.38□□□□□ -1.39
PTPN4-209ENST00000469511 MICAL3Q7RTP6 2002 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 ZNF532Q9HCE3 1301 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 TCRBV5S4A2TA0A5A2 114 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 SURF6O75683 361 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 GNAI3P08754 354 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 IQCF3P0C7M6 154 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 PDE6AP16499 860 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 SNAP25P60880 206 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 SEMA3FQ13275 785 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 FSCN1Q16658 493 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 LEXMQ3ZCV2 418 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 TLK2Q86UE8 772 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 TRMT2AQ8IZ69 625 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 ZNF592Q92610 1267 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 SLF1Q9BQI6 1058 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 TEX13BQ9BXU2 312 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 API5Q9BZZ5 524 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 SPC25Q9HBM1 224 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 ALG13Q9NP73 1137 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 HOMER2Q9NSB8 354 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 FAM86C1Q9NVL1 165 aa6.37□□□□□ -1.39
PTPN4-209ENST00000469511 FCF1Q9Y324 198 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 RIF1Q5UIP0 2472 aaKnown RBP6.37□□□□□ -1.39
PTPN4-209ENST00000469511 TRIOO75962 3097 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 TNKSO95271 1327 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 USP17L12C9JPN9 530 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 USP17L21D6R901 530 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 E9PSI1 815 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 DCXO43602 365 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 RGS20O76081 388 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 NDUFB10O96000 172 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 GNAI2P04899 355 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 IRS1P35568 1242 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 MCCD1P59942 119 aaPredicted RBP6.36□□□□□ -1.39
PTPN4-209ENST00000469511 SLC9C2Q5TAH2 1124 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 C12orf60Q5U649 245 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 FAM117BQ6P1L5 589 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 FBXO16Q8IX29 292 aaPredicted RBP6.36□□□□□ -1.39
PTPN4-209ENST00000469511 ANKRD35Q8N283 1001 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 FAM133AQ8N9E0 248 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 SSH3Q8TE77 659 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.36□□□□□ -1.39
PTPN4-209ENST00000469511 KIFC2Q96AC6 838 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 CTAGE1Q96RT6 745 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 SLC9A7Q96T83 725 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 OCSTAMPQ9BR26 566 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 C17orf80Q9BSJ5 609 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 CRNKL1Q9BZJ0 848 aaKnown RBP6.36□□□□□ -1.39
PTPN4-209ENST00000469511 MYO10Q9HD67 2058 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 C5orf42Q9H799 3197 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 FAM186AA6NE01 2351 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 USP34Q70CQ2 3546 aa6.36□□□□□ -1.39
PTPN4-209ENST00000469511 ZNF536O15090 1300 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 LINC01553A4QN01 128 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 F5H6K3 240 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 MYL3P08590 195 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 ALADP13716 330 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 TRIM27P14373 513 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 RARSP54136 660 aaKnown RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 WDR5P61964 334 aaKnown RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 ATP8B2P98198 1209 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 PURAQ00577 322 aaKnown RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 ZP2Q05996 745 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 KLRC3Q07444 240 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 DLX2Q07687 328 aaPredicted RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 TCF15Q12870 199 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 OS9Q13438 667 aaPredicted RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 NBPF20Q3BBV1 942 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 MUM1L1Q5H9M0 696 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 C16orf86Q6ZW13 317 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 RASGRP2Q7LDG7 609 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 PHOSPHO2Q8TCD6 241 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 NEK9Q8TD19 979 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 COPS5Q92905 334 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 FTOQ9C0B1 505 aaKnown RBP eCLIP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 SLC38A10Q9HBR0 1119 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms