RNA–Protein interactions for RNA: ENST00000468565.1

COL27A1-203, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 1,946 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-203ENST00000468565 TRIM43BA6NCK2 446 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 EIF3JO75822 258 aaKnown RBP16.68■□□□□ 0.26
COL27A1-203ENST00000468565 HOXA13P31271 388 aaPredicted RBP16.68■□□□□ 0.26
COL27A1-203ENST00000468565 FAAP100Q0VG06 881 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 BRDTQ58F21 947 aaPredicted RBP16.68■□□□□ 0.26
COL27A1-203ENST00000468565 TMTC3Q6ZXV5 915 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 SH3RF1Q7Z6J0 888 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 SLC43A3Q8NBI5 491 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 PIBF1Q8WXW3 757 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 TRIM43Q96BQ3 446 aaPredicted RBP16.68■□□□□ 0.26
COL27A1-203ENST00000468565 PDCD2LQ9BRP1 358 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 POLR3EQ9NVU0 708 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 RBM28Q9NW13 759 aaKnown RBP16.68■□□□□ 0.26
COL27A1-203ENST00000468565 SNX14Q9Y5W7 946 aa16.68■□□□□ 0.26
COL27A1-203ENST00000468565 ARIH2O95376 493 aa16.67■□□□□ 0.26
COL27A1-203ENST00000468565 RCAN1P53805 252 aa16.67■□□□□ 0.26
COL27A1-203ENST00000468565 GSE1Q14687 1217 aa16.67■□□□□ 0.26
COL27A1-203ENST00000468565 TCEANC2Q96MN5 208 aa16.67■□□□□ 0.26
COL27A1-203ENST00000468565 PCDH10Q9P2E7 1040 aa16.67■□□□□ 0.26
COL27A1-203ENST00000468565 PGM5Q15124 567 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 SEPT14Q6ZU15 432 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 RAB11FIP4Q86YS3 637 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 FAM126BQ8IXS8 530 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 TMEM39AQ9NV64 488 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 BRPF3Q9ULD4 1205 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 FRMPD4Q14CM0 1322 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 A6NJR5 290 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 TLR3O15455 904 aaKnown RBP16.66■□□□□ 0.26
COL27A1-203ENST00000468565 ZBTB43O43298 467 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 KPNA6O60684 536 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 ITGA7Q13683 1181 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 VSIG10LQ86VR7 867 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 CMTR1Q8N1G2 835 aaKnown RBP16.66■□□□□ 0.26
COL27A1-203ENST00000468565 SPRYD3Q8NCJ5 442 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 COPS5Q92905 334 aa16.66■□□□□ 0.26
COL27A1-203ENST00000468565 JAKMIP1Q96N16 626 aaKnown RBP16.66■□□□□ 0.26
COL27A1-203ENST00000468565 PIK3CDO00329 1044 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 GH1P01241 217 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 PURAQ00577 322 aaKnown RBP16.65■□□□□ 0.26
COL27A1-203ENST00000468565 RTN1Q16799 776 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 LRIT3Q3SXY7 679 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 BLOC1S2Q6QNY1 142 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 FBXL16Q8N461 479 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 BADQ92934 168 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 KIF2CQ99661 725 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 TBX21Q9UL17 535 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 LAMA3Q16787 3333 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 GRIN2DO15399 1336 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 CNTNAP5Q8WYK1 1306 aa16.65■□□□□ 0.26
COL27A1-203ENST00000468565 KLF18A0A0U1RQI7 1052 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 PSMA5P28066 241 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 CCND2P30279 289 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 KCNV1Q6PIU1 500 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 FCHSD1Q86WN1 690 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 CUL5Q93034 780 aa16.64■□□□□ 0.26
COL27A1-203ENST00000468565 MTG1Q9BT17 334 aaPredicted RBP16.64■□□□□ 0.26
COL27A1-203ENST00000468565 DDX41Q9UJV9 622 aaKnown RBP16.64■□□□□ 0.26
COL27A1-203ENST00000468565 CD4P01730 458 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 MYL3P08590 195 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 MYCLP12524 364 aaPredicted RBP16.64■□□□□ 0.25
COL27A1-203ENST00000468565 RAG1P15918 1043 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 ITGB8P26012 769 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 FGD1P98174 961 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 ARHGAP1Q07960 439 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 LY6KQ17RY6 165 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 Q6ZUG5 572 aa16.64■□□□□ 0.25
COL27A1-203ENST00000468565 EMID1Q96A84 441 aaPredicted RBP16.64■□□□□ 0.25
COL27A1-203ENST00000468565 DOCK5Q9H7D0 1870 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 GOLGA8AA7E2F4 631 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 GOLGA8BA8MQT2 603 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 RGS20O76081 388 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 RPS6KB1P23443 525 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 IL31RAQ8NI17 732 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 SMARCC2Q8TAQ2 1214 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 AGXT2Q9BYV1 514 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 MRVI1Q9Y6F6 885 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 NID2Q14112 1375 aa16.63■□□□□ 0.25
COL27A1-203ENST00000468565 MEIS2O14770 477 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 STAM2O75886 525 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 TIMP1P01033 207 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 CPA1P15085 419 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 PSMC6P62333 389 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 CCDC82Q8N4S0 544 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 SOX1O00570 391 aaPredicted RBP16.62■□□□□ 0.25
COL27A1-203ENST00000468565 MMP3P08254 477 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 TGFB3P10600 412 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 FUT2Q10981 343 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 RABEP1Q15276 862 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 USP17L6PQ6QN14 398 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 TEX2Q8IWB9 1127 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 USP26Q9BXU7 913 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 PSTPIP2Q9H939 334 aa16.62■□□□□ 0.25
COL27A1-203ENST00000468565 hCG_1642624A0A1W2PR95 340 aa16.61■□□□□ 0.25
COL27A1-203ENST00000468565 hCG_1984214I3L0E3 225 aa16.61■□□□□ 0.25
COL27A1-203ENST00000468565 CASTP20810 708 aaKnown RBP16.61■□□□□ 0.25
COL27A1-203ENST00000468565 LAMC2Q13753 1193 aa16.61■□□□□ 0.25
COL27A1-203ENST00000468565 XRRA1Q6P2D8 792 aa16.61■□□□□ 0.25
COL27A1-203ENST00000468565 ZNF713Q8N859 430 aaPredicted RBP16.61■□□□□ 0.25
COL27A1-203ENST00000468565 AFG1LQ8WV93 481 aa16.61■□□□□ 0.25
COL27A1-203ENST00000468565 BRF1Q92994 677 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms