RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 HSD17B4P51659 736 aa22.27■■□□□ 1.16
COL9A3-206ENST00000466532 RALYLQ86SE5 291 aaKnown RBP22.27■■□□□ 1.16
COL9A3-206ENST00000466532 SLC28A3Q9HAS3 691 aa22.27■■□□□ 1.16
COL9A3-206ENST00000466532 YBX2Q9Y2T7 364 aaKnown RBP22.27■■□□□ 1.16
COL9A3-206ENST00000466532 PCDHA1Q9Y5I3 950 aa22.27■■□□□ 1.16
COL9A3-206ENST00000466532 ERICH2A1L162 156 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 PITPNM1O00562 1244 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 RABGGTBP53611 331 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 GHRHRQ02643 423 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 GRM4Q14833 912 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 HOMER1Q86YM7 354 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 USP38Q8NB14 1042 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 RETREG2Q8NC44 543 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 DDX41Q9UJV9 622 aaKnown RBP22.26■■□□□ 1.15
COL9A3-206ENST00000466532 MRVI1Q9Y6F6 885 aa22.26■■□□□ 1.15
COL9A3-206ENST00000466532 CASTP20810 708 aaKnown RBP22.25■■□□□ 1.15
COL9A3-206ENST00000466532 RFC2P35250 354 aa22.25■■□□□ 1.15
COL9A3-206ENST00000466532 BFSP2Q13515 415 aa22.25■■□□□ 1.15
COL9A3-206ENST00000466532 NCOA7Q8NI08 942 aa22.25■■□□□ 1.15
COL9A3-206ENST00000466532 MAP3K20Q9NYL2 800 aaKnown RBP22.25■■□□□ 1.15
COL9A3-206ENST00000466532 TAF6LQ9Y6J9 622 aa22.25■■□□□ 1.15
COL9A3-206ENST00000466532 E7EWF7 191 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 SGSM2O43147 1006 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 IQCF3P0C7M6 154 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 MYCLP12524 364 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-206ENST00000466532 ACTN1P12814 892 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 ATP2A2P16615 1042 aaKnown RBP22.24■■□□□ 1.15
COL9A3-206ENST00000466532 HOXA13P31271 388 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-206ENST00000466532 WTAPQ15007 396 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 SART3Q15020 963 aaKnown RBP22.24■■□□□ 1.15
COL9A3-206ENST00000466532 PTGISQ16647 500 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 DGKDQ16760 1214 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 SLC35G1Q2M3R5 365 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 KAT2BQ92831 832 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 PIGSQ96S52 555 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 PDCD2LQ9BRP1 358 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 SENP2Q9HC62 589 aa22.24■■□□□ 1.15
COL9A3-206ENST00000466532 TRAF1Q13077 416 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 LAMC2Q13753 1193 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 STOX1Q6ZVD7 989 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 SESTD1Q86VW0 696 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 SAMD3Q8N6K7 520 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 PPM1EQ8WY54 764 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 EMID1Q96A84 441 aaPredicted RBP22.23■■□□□ 1.15
COL9A3-206ENST00000466532 RIOX1Q9H6W3 641 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 PCDHA11Q9Y5I1 949 aa22.23■■□□□ 1.15
COL9A3-206ENST00000466532 MYOGP15173 224 aa22.22■■□□□ 1.15
COL9A3-206ENST00000466532 PGM5Q15124 567 aa22.22■■□□□ 1.15
COL9A3-206ENST00000466532 PPP2R2DQ66LE6 453 aa22.22■■□□□ 1.15
COL9A3-206ENST00000466532 GDF6Q6KF10 455 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-206ENST00000466532 DHX37Q8IY37 1157 aaKnown RBP22.22■■□□□ 1.15
COL9A3-206ENST00000466532 CCDC155Q8N6L0 562 aa22.22■■□□□ 1.15
COL9A3-206ENST00000466532 FTOQ9C0B1 505 aaKnown RBP eCLIP22.22■■□□□ 1.15
COL9A3-206ENST00000466532 CHD7Q9P2D1 2997 aa22.22■■□□□ 1.15
COL9A3-206ENST00000466532 CYTH3O43739 400 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 TROAPQ12815 778 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 ADGRE1Q14246 886 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 TMEM67Q5HYA8 995 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 PPTC7Q8NI37 304 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 CAGE1Q8TC20 777 aa22.21■■□□□ 1.15
COL9A3-206ENST00000466532 VCANP13611 3396 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 GCOM1H8Y6P7 765 aaPredicted RBP22.2■■□□□ 1.14
COL9A3-206ENST00000466532 RGS20O76081 388 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 POLR2MP0CAP2 368 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 IGFBP4P22692 258 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 PSEN2P49810 448 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 ANTXR2P58335 489 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 KCNV1Q6PIU1 500 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 CATIPQ7Z7H3 387 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 VSIG10LQ86VR7 867 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 C7orf31Q8N865 590 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 IL31RAQ8NI17 732 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 AFAP1L1Q8TED9 768 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 MAP4K1Q92918 833 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 CTAGE1Q96RT6 745 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 ALG1Q9BT22 464 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 KATNAL1Q9BW62 490 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 HDAC6Q9UBN7 1215 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 GTF2IRD1Q9UHL9 959 aa22.2■■□□□ 1.14
COL9A3-206ENST00000466532 PNMA6FA0A0J9YX94 578 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 SORBS3O60504 671 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 ZNF286BP0CG31 522 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 FCHSD1Q86WN1 690 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 MB21D2Q8IYB1 491 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-206ENST00000466532 SLC9A7Q96T83 725 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 PRDM6Q9NQX0 595 aa22.19■■□□□ 1.14
COL9A3-206ENST00000466532 RBM8AQ9Y5S9 174 aaKnown RBP22.19■■□□□ 1.14
COL9A3-206ENST00000466532 KAT6AQ92794 2004 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 GGPS1O95749 300 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 F2P00734 622 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 CCND2P30279 289 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 MFSD10Q14728 455 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 KIAA0753Q2KHM9 967 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 MYSM1Q5VVJ2 828 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 IGDCC4Q8TDY8 1250 aa22.18■■□□□ 1.14
COL9A3-206ENST00000466532 DHX38Q92620 1227 aaKnown RBP22.18■■□□□ 1.14
COL9A3-206ENST00000466532 ZFP91Q96JP5 570 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-206ENST00000466532 HAS3O00219 553 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 CCDC85BQ15834 202 aaPredicted RBP22.17■■□□□ 1.14
COL9A3-206ENST00000466532 HSDL1Q3SXM5 330 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms