RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 FAM169BQ8N8A8 192 aa6.66□□□□□ -1.34
LRCH3-211ENST00000466054 NBPF4Q96M43 638 aa6.66□□□□□ -1.34
LRCH3-211ENST00000466054 FCRL3Q96P31 734 aaPredicted RBP6.66□□□□□ -1.34
LRCH3-211ENST00000466054 SLC9A7Q96T83 725 aa6.66□□□□□ -1.34
LRCH3-211ENST00000466054 ZNF341Q9BYN7 854 aa6.66□□□□□ -1.34
LRCH3-211ENST00000466054 TCAF1Q9Y4C2 921 aa6.66□□□□□ -1.34
LRCH3-211ENST00000466054 SMAD7O15105 426 aaKnown RBP6.65□□□□□ -1.34
LRCH3-211ENST00000466054 ACRP10323 421 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 UNC5AQ6ZN44 842 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 RUFY4Q6ZNE9 571 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 TTLL6Q8N841 843 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 KYQ8NBH2 561 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 GORASP1Q9BQQ3 440 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 C11orf84Q9BUA3 381 aaPredicted RBP6.65□□□□□ -1.34
LRCH3-211ENST00000466054 SSBP3Q9BWW4 388 aaPredicted RBP6.65□□□□□ -1.34
LRCH3-211ENST00000466054 ACTR10Q9NZ32 417 aa6.65□□□□□ -1.34
LRCH3-211ENST00000466054 R3HCC1Q9Y3T6 440 aaKnown RBP6.65□□□□□ -1.34
LRCH3-211ENST00000466054 A0A1W2PQH9 124 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 IFNGR1P15260 489 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 TGFB2P61812 414 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 TDRD10Q5VZ19 366 aaKnown RBP6.64□□□□□ -1.35
LRCH3-211ENST00000466054 ANKS3Q6ZW76 656 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 TXNDC5Q8NBS9 432 aaKnown RBP6.64□□□□□ -1.35
LRCH3-211ENST00000466054 SMARCC1Q92922 1105 aaPredicted RBP6.64□□□□□ -1.35
LRCH3-211ENST00000466054 ZDHHC15Q96MV8 337 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 PHAXQ9H814 394 aaKnown RBP6.64□□□□□ -1.35
LRCH3-211ENST00000466054 PPP1R1BQ9UD71 204 aaPredicted RBP6.64□□□□□ -1.35
LRCH3-211ENST00000466054 FHOD1Q9Y613 1164 aa6.64□□□□□ -1.35
LRCH3-211ENST00000466054 C9IYK1 514 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 KLF4O43474 513 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 CYP1A1P04798 512 aaPredicted RBP6.63□□□□□ -1.35
LRCH3-211ENST00000466054 C8BP07358 591 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 ZNF445P59923 1031 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 PPP2R5EQ16537 467 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 ETV3LQ6ZN32 361 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 ZC3H18Q86VM9 953 aaKnown RBP6.63□□□□□ -1.35
LRCH3-211ENST00000466054 GP6Q9HCN6 339 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 PPP4R1LQ9P1A2 415 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 C11orf21Q9P2W6 132 aa6.63□□□□□ -1.35
LRCH3-211ENST00000466054 ING1Q9UK53 422 aaPredicted RBP6.63□□□□□ -1.35
LRCH3-211ENST00000466054 DDX3XO00571 662 aaKnown RBP eCLIP6.62□□□□□ -1.35
LRCH3-211ENST00000466054 MUSKO15146 869 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 SHOXO15266 292 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 ITGA4P13612 1032 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 SELENOPP49908 381 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 PMS1P54277 932 aaKnown RBP6.62□□□□□ -1.35
LRCH3-211ENST00000466054 ZYXQ15942 572 aaKnown RBP6.62□□□□□ -1.35
LRCH3-211ENST00000466054 PRAMEF18Q5VWM3 479 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 EEF1DP3Q658K8 133 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 DCAF15Q66K64 600 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 WWC2Q6AWC2 1192 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 CD300LDQ6UXZ3 194 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 NOL6Q9H6R4 1146 aaKnown RBP6.62□□□□□ -1.35
LRCH3-211ENST00000466054 USP35Q9P2H5 1018 aa6.62□□□□□ -1.35
LRCH3-211ENST00000466054 ZNF214Q9UL59 606 aaPredicted RBP6.62□□□□□ -1.35
LRCH3-211ENST00000466054 LTBP3Q9NS15 1303 aa6.61□□□□□ -1.35
LRCH3-211ENST00000466054 RBM10P98175 930 aaKnown RBP6.61□□□□□ -1.35
LRCH3-211ENST00000466054 RAB33AQ14088 237 aa6.61□□□□□ -1.35
LRCH3-211ENST00000466054 FHL2Q14192 279 aa6.61□□□□□ -1.35
LRCH3-211ENST00000466054 FXNQ16595 210 aa6.61□□□□□ -1.35
LRCH3-211ENST00000466054 HNRNPLLQ8WVV9 542 aaKnown RBP6.61□□□□□ -1.35
LRCH3-211ENST00000466054 FAM86C1Q9NVL1 165 aa6.61□□□□□ -1.35
LRCH3-211ENST00000466054 TP53P04637 393 aaPredicted RBP6.6□□□□□ -1.35
LRCH3-211ENST00000466054 STK32CQ86UX6 486 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 TRIM55Q9BYV6 548 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 AP5M1Q9H0R1 490 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 SEMA4AQ9H3S1 761 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 SIRPGQ9P1W8 387 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 GULP1Q9UBP9 304 aa6.6□□□□□ -1.35
LRCH3-211ENST00000466054 C9orf118A6NHY6 69 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 U2SURPO15042 1029 aaKnown RBP6.59□□□□□ -1.35
LRCH3-211ENST00000466054 B4GALT3O60512 393 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 SEPHS1P49903 392 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 SLC7A5Q01650 507 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 PPP2R5DQ14738 602 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 NCAPHQ15003 741 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 TCEAL1Q15170 157 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 RCSD1Q6JBY9 416 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 ARHGEF18Q6ZSZ5 1173 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 DCP2Q8IU60 420 aaKnown RBP6.59□□□□□ -1.35
LRCH3-211ENST00000466054 IGDCC4Q8TDY8 1250 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 CD248Q9HCU0 757 aa6.59□□□□□ -1.35
LRCH3-211ENST00000466054 CD247P20963 164 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 SMN1Q16637 294 aaKnown RBP6.58□□□□□ -1.36
LRCH3-211ENST00000466054 ANKRD39Q53RE8 183 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 SPDYAQ5MJ70 313 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 AXDND1Q5T1B0 1012 aaPredicted RBP6.58□□□□□ -1.36
LRCH3-211ENST00000466054 LARP1BQ659C4 914 aaKnown RBP6.58□□□□□ -1.36
LRCH3-211ENST00000466054 VHLLQ6RSH7 139 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 DNAJC2Q99543 621 aaKnown RBP6.58□□□□□ -1.36
LRCH3-211ENST00000466054 L2HGDHQ9H9P8 463 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 FBLN5Q9UBX5 448 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 SIT1Q9Y3P8 196 aa6.58□□□□□ -1.36
LRCH3-211ENST00000466054 WDR33Q9C0J8 1336 aaKnown RBP6.57□□□□□ -1.36
LRCH3-211ENST00000466054 NTRK1P04629 796 aa6.57□□□□□ -1.36
LRCH3-211ENST00000466054 ZNF143P52747 638 aaPredicted RBP6.57□□□□□ -1.36
LRCH3-211ENST00000466054 SERINC3Q13530 473 aa6.57□□□□□ -1.36
LRCH3-211ENST00000466054 DDR2Q16832 855 aa6.57□□□□□ -1.36
LRCH3-211ENST00000466054 GNPTABQ3T906 1256 aa6.57□□□□□ -1.36
LRCH3-211ENST00000466054 PPFIBP1Q86W92 1011 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms