RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 LIMCH1Q9UPQ0 1083 aa13.39□□□□□ -0.27
CUX1-207ENST00000465461 RBM47A0AV96 593 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 B4DLN1 442 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 hCG_1984214I3L0E3 225 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 CTAGE5O15320 804 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 EIF3JO75822 258 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 DEXIO95424 95 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 TXNP10599 105 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 FDPSP14324 419 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 CCND2P30279 289 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 MRPL12P52815 198 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 FOSBP53539 338 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 KCNA10Q16322 511 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 PPP1R18Q6NYC8 613 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 NECAB2Q7Z6G3 386 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 TLK2Q86UE8 772 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 ZNF713Q8N859 430 aaPredicted RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 ANKLE1Q8NAG6 615 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 ARRDC4Q8NCT1 418 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 RBM27Q9P2N5 1060 aaKnown RBP13.38□□□□□ -0.27
CUX1-207ENST00000465461 KCNJ14Q9UNX9 436 aa13.38□□□□□ -0.27
CUX1-207ENST00000465461 SPDYE3A6NKU9 549 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 KBTBD13C9JR72 458 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 DNM1LO00429 736 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 COL6A1P12109 1028 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 CLK2P49760 499 aaKnown RBP13.37□□□□□ -0.27
CUX1-207ENST00000465461 ATN1P54259 1190 aaPredicted RBP13.37□□□□□ -0.27
CUX1-207ENST00000465461 GJA9P57773 515 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 NLRP5P59047 1200 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 DUSP28Q4G0W2 176 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 CCDC62Q6P9F0 684 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 RNF180Q86T96 592 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 NSUN7Q8NE18 718 aaKnown RBP13.37□□□□□ -0.27
CUX1-207ENST00000465461 KLHDC9Q8NEP7 349 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 SCFD2Q8WU76 684 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 ZMYND12Q9H0C1 365 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 BCAS3Q9H6U6 928 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 C6orf50Q9HD87 102 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 ORC3Q9UBD5 711 aaPredicted RBP13.37□□□□□ -0.27
CUX1-207ENST00000465461 FRMPD4Q14CM0 1322 aa13.37□□□□□ -0.27
CUX1-207ENST00000465461 CDKL5O76039 1030 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 SP2Q02086 613 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 TTLL4Q14679 1199 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 GNASQ5JWF2 1037 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 CCSAPQ6IQ19 270 aaPredicted RBP13.36□□□□□ -0.27
CUX1-207ENST00000465461 OR6J1Q8NGC5 347 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 DPF3Q92784 378 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 ANO3Q9BYT9 981 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 AP5M1Q9H0R1 490 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 UPF3AQ9H1J1 476 aaKnown RBP13.36□□□□□ -0.27
CUX1-207ENST00000465461 DDX41Q9UJV9 622 aaKnown RBP13.36□□□□□ -0.27
CUX1-207ENST00000465461 MRVI1Q9Y6F6 885 aa13.36□□□□□ -0.27
CUX1-207ENST00000465461 KIAA1217Q5T5P2 1943 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ESYT2A0FGR8 921 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ASGR1P07306 291 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ACLYP53396 1101 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 SEMA3FQ13275 785 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 LRRC26Q2I0M4 334 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 PCNX4Q63HM2 1172 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 CYP2W1Q8TAV3 490 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 CCDC12Q8WUD4 166 aaPredicted RBP13.35□□□□□ -0.27
CUX1-207ENST00000465461 PPP1R13LQ8WUF5 828 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ZSCAN31Q96LW9 406 aaPredicted RBP13.35□□□□□ -0.27
CUX1-207ENST00000465461 UIMC1Q96RL1 719 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ALG1Q9BT22 464 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 SPC25Q9HBM1 224 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 SH3GLB2Q9NR46 395 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 PKD2L1Q9P0L9 805 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 PHF24Q9UPV7 400 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 STK36Q9NRP7 1315 aa13.35□□□□□ -0.27
CUX1-207ENST00000465461 ST18O60284 1047 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 CAPN2P17655 700 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 ITGB5P18084 799 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 GNA11P29992 359 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 NPY5RQ15761 445 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 FSCN1Q16658 493 aaKnown RBP13.34□□□□□ -0.27
CUX1-207ENST00000465461 CXCL17Q6UXB2 119 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 CCDC148Q8NFR7 591 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 Q9Y3F1 56 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 TELO2Q9Y4R8 837 aa13.34□□□□□ -0.27
CUX1-207ENST00000465461 ALPK3Q96L96 1907 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 A0A1W2PQ45 241 aaPredicted RBP13.33□□□□□ -0.28
CUX1-207ENST00000465461 A0A1W2PQY0 241 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 ATP9AO75110 1047 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 FOSP01100 380 aaPredicted RBP13.33□□□□□ -0.28
CUX1-207ENST00000465461 GH1P01241 217 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 MYL3P08590 195 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 UBA1P22314 1058 aaKnown RBP13.33□□□□□ -0.28
CUX1-207ENST00000465461 CST5P28325 142 aaPredicted RBP13.33□□□□□ -0.28
CUX1-207ENST00000465461 PSMC6P62333 389 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 ARHGAP1Q07960 439 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 AP3B2Q13367 1082 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 SLC39A5Q6ZMH5 540 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 BLIDQ8IZY5 108 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 REXO1Q8N1G1 1221 aaKnown RBP13.33□□□□□ -0.28
CUX1-207ENST00000465461 OXER1Q8TDS5 423 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 AFG1LQ8WV93 481 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 VTI1AQ96AJ9 217 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 TMX3Q96JJ7 454 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 INPP4AQ96PE3 977 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms