RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 V9GY48 417 aaPredicted RBP15.03■□□□□ -0
COL28A1-206ENST00000465339 ELP1O95163 1332 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 A0A1W2PQ45 241 aaPredicted RBP15.02■□□□□ -0
COL28A1-206ENST00000465339 A0A1W2PQY0 241 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 PIK3CDO00329 1044 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 CTAGE5O15320 804 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 ZEB2O60315 1214 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 ASGR1P07306 291 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 TXNP10599 105 aaKnown RBP15.02■□□□□ -0
COL28A1-206ENST00000465339 EIF2AK2P19525 551 aaKnown RBP15.02■□□□□ -0
COL28A1-206ENST00000465339 CDC27P30260 824 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 FUT2Q10981 343 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 TTLL4Q14679 1199 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 SNX17Q15036 470 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 FSCN1Q16658 493 aaKnown RBP15.02■□□□□ -0
COL28A1-206ENST00000465339 FCHSD1Q86WN1 690 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 TEX2Q8IWB9 1127 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 SMARCC2Q8TAQ2 1214 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 GLT1D1Q96MS3 346 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 PDCD2LQ9BRP1 358 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 PSTPIP2Q9H939 334 aa15.02■□□□□ -0
COL28A1-206ENST00000465339 NID2Q14112 1375 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 CNTNAP5Q8WYK1 1306 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 hCG_1642624A0A1W2PR95 340 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 MYADML2A6NDP7 307 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 hCG_1984214I3L0E3 225 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 CABYRO75952 493 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 ADD1P35611 737 aaKnown RBP15.01□□□□□ -0.01
COL28A1-206ENST00000465339 PSEN1P49768 467 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 RTP1P59025 263 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 PGM5Q15124 567 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 KCNV1Q6PIU1 500 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 VSIG10LQ86VR7 867 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 ZNF713Q8N859 430 aaPredicted RBP15.01□□□□□ -0.01
COL28A1-206ENST00000465339 STARD7Q9NQZ5 370 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 PDRG1Q9NUG6 133 aa15.01□□□□□ -0.01
COL28A1-206ENST00000465339 MYH7BA7E2Y1 1941 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 RIOK3O14730 519 aaKnown RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 MEIS2O14770 477 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 MYCLP12524 364 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 PDIA3P30101 505 aaKnown RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 CCND2P30279 289 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 CPT1AP50416 773 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 IRX5P78411 483 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 BEX3Q00994 111 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 TOB2Q14106 344 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 BRDTQ58F21 947 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 TMEM63BQ5T3F8 832 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 CCDC62Q6P9F0 684 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 USP17L6PQ6QN14 398 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 SEPT14Q6ZU15 432 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 HEATR3Q7Z4Q2 680 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 VTI1AQ96AJ9 217 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 ZNF274Q96GC6 653 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 UPF3BQ9BZI7 483 aaKnown RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 ALDH8A1Q9H2A2 487 aaPredicted RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 RBM27Q9P2N5 1060 aaKnown RBP15□□□□□ -0.01
COL28A1-206ENST00000465339 ATP11BQ9Y2G3 1177 aa15□□□□□ -0.01
COL28A1-206ENST00000465339 STAM2O75886 525 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 PDAP1Q13442 181 aaKnown RBP14.99□□□□□ -0.01
COL28A1-206ENST00000465339 PPP1R18Q6NYC8 613 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 XRRA1Q6P2D8 792 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 OR6J1Q8NGC5 347 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 IL17RAQ96F46 866 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 SEZ6LQ9BYH1 1024 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 GLT8D2Q9H1C3 349 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 POLR3EQ9NVU0 708 aa14.99□□□□□ -0.01
COL28A1-206ENST00000465339 FRMPD4Q14CM0 1322 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 PRPF3O43395 683 aaKnown RBP14.98□□□□□ -0.01
COL28A1-206ENST00000465339 KPNA6O60684 536 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 GH1P01241 217 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 TGFB3P10600 412 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 NAPAP54920 295 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 PFKFB3Q16875 520 aaPredicted RBP14.98□□□□□ -0.01
COL28A1-206ENST00000465339 TRIM60Q495X7 471 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 WWC2Q6AWC2 1192 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 GPKOWQ92917 476 aaPredicted RBP eCLIP14.98□□□□□ -0.01
COL28A1-206ENST00000465339 TOX2Q96NM4 488 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 BARHL2Q9NY43 387 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 PRKAG2Q9UGJ0 569 aa14.98□□□□□ -0.01
COL28A1-206ENST00000465339 DDX41Q9UJV9 622 aaKnown RBP14.98□□□□□ -0.01
COL28A1-206ENST00000465339 ZMYND8Q9ULU4 1186 aaPredicted RBP14.98□□□□□ -0.01
COL28A1-206ENST00000465339 MROH7Q68CQ1 1323 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 A0A0U1RQG5 324 aaPredicted RBP14.97□□□□□ -0.01
COL28A1-206ENST00000465339 A6NJR5 290 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 DCDC2CA8MYV0 355 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 ARIH2O95376 493 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 SEC24BO95487 1268 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 SCG2P13521 617 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 IFNAR1P17181 557 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 CDK7P50613 346 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 AKAP17AQ02040 695 aaKnown RBP14.97□□□□□ -0.01
COL28A1-206ENST00000465339 TLE2Q04725 743 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 ANKRD1Q15327 319 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 NTRK3Q16288 839 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 LY6KQ17RY6 165 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 GNPTABQ3T906 1256 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 PCNX4Q63HM2 1172 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 CXCL17Q6UXB2 119 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 ANKRD33Q7Z3H0 272 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms