RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 BLIDQ8IZY5 108 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 AIFM3Q96NN9 605 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 ANO3Q9BYT9 981 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 WDR11Q9BZH6 1224 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 OGDHLQ9ULD0 1010 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 DDX49Q9Y6V7 483 aaKnown RBP22.63■■□□□ 1.21
COL9A3-204ENST00000463487 KIAA0100Q14667 2235 aaKnown RBP22.63■■□□□ 1.21
COL9A3-204ENST00000463487 RBM47A0AV96 593 aaKnown RBP22.62■■□□□ 1.21
COL9A3-204ENST00000463487 FDPSP14324 419 aaKnown RBP22.62■■□□□ 1.21
COL9A3-204ENST00000463487 ADCYAP1R1P41586 468 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 JAKMIP3Q5VZ66 844 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 SEPT14Q6ZU15 432 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 NLRX1Q86UT6 975 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 PHF20Q9BVI0 1012 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 AP5M1Q9H0R1 490 aa22.62■■□□□ 1.21
COL9A3-204ENST00000463487 KBTBD13C9JR72 458 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 CAPN15O75808 1086 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 SAFBQ15424 915 aaKnown RBP eCLIP22.61■■□□□ 1.21
COL9A3-204ENST00000463487 DUSP28Q4G0W2 176 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 ANO1Q5XXA6 986 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 HSCBQ8IWL3 235 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 IL31RAQ8NI17 732 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 CDHR1Q96JP9 859 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 Q9Y3F1 56 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 MRVI1Q9Y6F6 885 aa22.61■■□□□ 1.21
COL9A3-204ENST00000463487 MYCNP04198 464 aaPredicted RBP22.6■■□□□ 1.21
COL9A3-204ENST00000463487 TXNP10599 105 aaKnown RBP22.6■■□□□ 1.21
COL9A3-204ENST00000463487 TGFB3P10600 412 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 EN2P19622 333 aaPredicted RBP22.6■■□□□ 1.21
COL9A3-204ENST00000463487 SREBF1P36956 1147 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 TLK2Q86UE8 772 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 C8orf76Q96K31 380 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 PDGFCQ9NRA1 345 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 TMEM260Q9NX78 707 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 KCNJ14Q9UNX9 436 aa22.6■■□□□ 1.21
COL9A3-204ENST00000463487 FRMPD3Q5JV73 1810 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 K7ELQ4 463 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-204ENST00000463487 DNM1LO00429 736 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 FIBPO43427 364 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 ZNF76P36508 570 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 BRDTQ58F21 947 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-204ENST00000463487 KRT25Q7Z3Z0 450 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 SNX21Q969T3 373 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 INPP4AQ96PE3 977 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-204ENST00000463487 SMC3Q9UQE7 1217 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 KIAA1217Q5T5P2 1943 aa22.59■■□□□ 1.21
COL9A3-204ENST00000463487 SYNRGQ9UMZ2 1314 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-204ENST00000463487 ZEB2O60315 1214 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 FARP2O94887 1054 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-204ENST00000463487 SMPD1P17405 629 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 KRT2P35908 639 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 ARHGAP4P98171 946 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 GPRASP2Q96D09 838 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 SHISA4Q96DD7 197 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 PGBD1Q96JS3 809 aa22.58■■□□□ 1.21
COL9A3-204ENST00000463487 GNEQ9Y223 722 aaKnown RBP22.58■■□□□ 1.21
COL9A3-204ENST00000463487 CCDC194A0A1B0GVG4 234 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 MAFGO15525 162 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 PGK1P00558 417 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 MMP1P03956 469 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 C6orf222P0C671 652 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-204ENST00000463487 GJA9P57773 515 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 MRPS9P82933 396 aaKnown RBP22.57■■□□□ 1.2
COL9A3-204ENST00000463487 PCSK9Q8NBP7 692 aaKnown RBP22.57■■□□□ 1.2
COL9A3-204ENST00000463487 OR6J1Q8NGC5 347 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 RASGRP4Q8TDF6 673 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 LENG1Q96BZ8 264 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-204ENST00000463487 UPF3AQ9H1J1 476 aaKnown RBP22.57■■□□□ 1.2
COL9A3-204ENST00000463487 RTEL1Q9NZ71 1219 aa22.57■■□□□ 1.2
COL9A3-204ENST00000463487 DTNBO60941 627 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 GH1P01241 217 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 ICAM3P32942 547 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 CPT1AP50416 773 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 MTMR1Q13613 665 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 NONOQ15233 471 aaKnown RBP eCLIP22.56■■□□□ 1.2
COL9A3-204ENST00000463487 LRRC41Q15345 812 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 KRT40Q6A162 431 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 NECAB2Q7Z6G3 386 aa22.56■■□□□ 1.2
COL9A3-204ENST00000463487 GIMAP8Q8ND71 665 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-204ENST00000463487 DYNC1LI2O43237 492 aaPredicted RBP22.55■■□□□ 1.2
COL9A3-204ENST00000463487 ADCY6O43306 1168 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 CYP3A4P08684 503 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 CST5P28325 142 aaPredicted RBP22.55■■□□□ 1.2
COL9A3-204ENST00000463487 FOSBP53539 338 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 CUL4AQ13619 759 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 GNL2Q13823 731 aaKnown RBP22.55■■□□□ 1.2
COL9A3-204ENST00000463487 NEDD9Q14511 834 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 CEP55Q53EZ4 464 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 CCDC62Q6P9F0 684 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 TSEN34Q9BSV6 310 aaKnown RBP22.55■■□□□ 1.2
COL9A3-204ENST00000463487 DDX41Q9UJV9 622 aaKnown RBP22.55■■□□□ 1.2
COL9A3-204ENST00000463487 UBIAD1Q9Y5Z9 338 aa22.55■■□□□ 1.2
COL9A3-204ENST00000463487 MOXD2PA6NHM9 499 aa22.54■■□□□ 1.2
COL9A3-204ENST00000463487 SPATA31C2B4DYI2 1134 aa22.54■■□□□ 1.2
COL9A3-204ENST00000463487 ADAMTS4O75173 837 aa22.54■■□□□ 1.2
COL9A3-204ENST00000463487 RGS20O76081 388 aa22.54■■□□□ 1.2
COL9A3-204ENST00000463487 HSP90AA1P07900 732 aaKnown RBP22.54■■□□□ 1.2
COL9A3-204ENST00000463487 GJB2P29033 226 aa22.54■■□□□ 1.2
COL9A3-204ENST00000463487 USP11P51784 963 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms