RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 C9orf50Q5SZB4 431 aa17.76■□□□□ 0.43
VARS-219ENST00000461328 GPR153Q6NV75 609 aa17.76■□□□□ 0.43
VARS-219ENST00000461328 MTG1Q9BT17 334 aaPredicted RBP17.76■□□□□ 0.43
VARS-219ENST00000461328 GRIN2DO15399 1336 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 EPB41L2O43491 1005 aaKnown RBP17.75■□□□□ 0.43
VARS-219ENST00000461328 KPNA6O60684 536 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 EIF3JO75822 258 aaKnown RBP17.75■□□□□ 0.43
VARS-219ENST00000461328 PURAQ00577 322 aaKnown RBP17.75■□□□□ 0.43
VARS-219ENST00000461328 CCDC62Q6P9F0 684 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 Q6ZUG5 572 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 FCHSD1Q86WN1 690 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 CUL5Q93034 780 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 PPP1R12CQ9BZL4 782 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 BRPF3Q9ULD4 1205 aa17.75■□□□□ 0.43
VARS-219ENST00000461328 hCG_1642624A0A1W2PR95 340 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 GH1P01241 217 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 CD4P01730 458 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 MYCLP12524 364 aaPredicted RBP17.74■□□□□ 0.43
VARS-219ENST00000461328 RPS6KB1P23443 525 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 EPHB4P54760 987 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 LY6KQ17RY6 165 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 MFSD5Q6N075 450 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 HEATR3Q7Z4Q2 680 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 BRF1Q92994 677 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 PDCD2LQ9BRP1 358 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 MRVI1Q9Y6F6 885 aa17.74■□□□□ 0.43
VARS-219ENST00000461328 BAZ2BQ9UIF8 2168 aaKnown RBP17.74■□□□□ 0.43
VARS-219ENST00000461328 A6NJR5 290 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 B4GALT4O60513 344 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 METAP2P50579 478 aaKnown RBP eCLIP17.73■□□□□ 0.431e-6■■■■□ 21.9
VARS-219ENST00000461328 APOBRQ0VD83 1088 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 TMEM199Q8N511 208 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 DEFB123Q8N688 67 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 SMARCC2Q8TAQ2 1214 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 AFG1LQ8WV93 481 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 RNPC3Q96LT9 517 aaKnown RBP17.73■□□□□ 0.43
VARS-219ENST00000461328 USP26Q9BXU7 913 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 TRPV6Q9H1D0 765 aa17.73■□□□□ 0.43
VARS-219ENST00000461328 CNTNAP5Q8WYK1 1306 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 LAMA3Q16787 3333 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 CCND2P30279 289 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 ARHGAP1Q07960 439 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 PPIGQ13427 754 aaKnown RBP eCLIP17.72■□□□□ 0.436e-7■■■■□ 21.7
VARS-219ENST00000461328 PGM5Q15124 567 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 FAM47CQ5HY64 1035 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 ALDH8A1Q9H2A2 487 aaPredicted RBP17.72■□□□□ 0.43
VARS-219ENST00000461328 HIPK3Q9H422 1215 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 DDX41Q9UJV9 622 aaKnown RBP17.72■□□□□ 0.43
VARS-219ENST00000461328 CYP46A1Q9Y6A2 500 aa17.72■□□□□ 0.43
VARS-219ENST00000461328 CCDC196A0A1B0GTZ2 297 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 MMP3P08254 477 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 CYP2C18P33260 490 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 RCAN1P53805 252 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 KCNV1Q6PIU1 500 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 Q7L0L9 218 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 VSIG10LQ86VR7 867 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 IL31RAQ8NI17 732 aa17.71■□□□□ 0.43
VARS-219ENST00000461328 GPKOWQ92917 476 aaPredicted RBP eCLIP17.71■□□□□ 0.43
VARS-219ENST00000461328 KIAA1217Q5T5P2 1943 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 SZT2Q5T011 3432 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 SUPT20HL2P0C7V6 817 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 CSF2RAP15509 400 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 CHMP4BP1P59074 171 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 NBPF20Q3BBV1 942 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 RUFY3Q7L099 469 aa17.7■□□□□ 0.42
VARS-219ENST00000461328 DHX37Q8IY37 1157 aaKnown RBP17.7■□□□□ 0.42
VARS-219ENST00000461328 TRMT13Q9NUP7 481 aaKnown RBP17.7■□□□□ 0.42
VARS-219ENST00000461328 EIF5BO60841 1220 aaKnown RBP17.69■□□□□ 0.42
VARS-219ENST00000461328 NAPAP54920 295 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 LAMC2Q13753 1193 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 NFRKBQ6P4R8 1299 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 USP17L6PQ6QN14 398 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 PPP1R13LQ8WUF5 828 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 ZFP91Q96JP5 570 aaPredicted RBP17.69■□□□□ 0.42
VARS-219ENST00000461328 NOC4LQ9BVI4 516 aaKnown RBP17.69■□□□□ 0.42
VARS-219ENST00000461328 UPF3BQ9BZI7 483 aaKnown RBP17.69■□□□□ 0.42
VARS-219ENST00000461328 PSTPIP2Q9H939 334 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 UMODL1Q5DID0 1318 aa17.69■□□□□ 0.42
VARS-219ENST00000461328 SORBS3O60504 671 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 RGS20O76081 388 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 ACRP10323 421 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 CYP2C9P11712 490 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 CDC27P30260 824 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 CCL23P55773 120 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 DGKDQ16760 1214 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 WWC2Q6AWC2 1192 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 EMID1Q96A84 441 aaPredicted RBP17.68■□□□□ 0.42
VARS-219ENST00000461328 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.68■□□□□ 0.42
VARS-219ENST00000461328 ZSWIM6Q9HCJ5 1215 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 V9GY48 417 aaPredicted RBP17.68■□□□□ 0.42
VARS-219ENST00000461328 FRMPD4Q14CM0 1322 aa17.68■□□□□ 0.42
VARS-219ENST00000461328 PIK3CDO00329 1044 aa17.67■□□□□ 0.42
VARS-219ENST00000461328 GGPS1O95749 300 aa17.67■□□□□ 0.42
VARS-219ENST00000461328 ADD1P35611 737 aaKnown RBP17.67■□□□□ 0.42
VARS-219ENST00000461328 SMAD3P84022 425 aaKnown RBP17.67■□□□□ 0.42
VARS-219ENST00000461328 PTPN11Q06124 597 aaPredicted RBP17.67■□□□□ 0.42
VARS-219ENST00000461328 UBE2SQ16763 222 aa17.67■□□□□ 0.42
VARS-219ENST00000461328 GNPTABQ3T906 1256 aa17.67■□□□□ 0.42
VARS-219ENST00000461328 ZNF697Q5TEC3 545 aa17.67■□□□□ 0.42
VARS-219ENST00000461328 PSRC1Q6PGN9 363 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms