RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 TPM1P09493 284 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 CYP2D6P10635 497 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 FXR1P51114 621 aaKnown RBP eCLIP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 KCNQ4P56696 695 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 FILIP1LQ4L180 1135 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 C14orf80Q86SX3 495 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 MICALL1Q8N3F8 863 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 PRR7Q8TB68 274 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 ZBTB9Q96C00 473 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 NELL2Q99435 816 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 SLX1AQ9BQ83 275 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 BRIP1Q9BX63 1249 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 PARD6BQ9BYG5 372 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 PDGFDQ9GZP0 370 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 C12orf49Q9H741 205 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 TAGLN3Q9UI15 199 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 TMCC3Q9ULS5 477 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 MINPP1Q9UNW1 487 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 BAZ2BQ9UIF8 2168 aaKnown RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 EP400Q96L91 3159 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 COL1A1P02452 1464 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 SSTR3P32745 418 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 NFX1Q12986 1120 aaKnown RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 DDB1Q16531 1140 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 IL17AQ16552 155 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 JAMLQ86YT9 394 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 NDUFAF2Q8N183 169 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 CTCFLQ8NI51 663 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 CELF1Q92879 486 aaKnown RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 ITFG2Q969R8 447 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 TYW1Q9NV66 732 aaKnown RBP13.14□□□□□ -0.31
SYNE2-207ENST00000458046 TFCP2L1Q9NZI6 479 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 XDHP47989 1333 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 DOCK2Q92608 1830 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 SASH3O75995 380 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 ABL1P00519 1130 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 PBX1P40424 430 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 ATP2C1P98194 919 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-207ENST00000458046 LMNTD2Q8IXW0 634 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 GPR161Q8N6U8 529 aaKnown RBP13.13□□□□□ -0.31
SYNE2-207ENST00000458046 IQUBQ8NA54 791 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 LSM14AQ8ND56 463 aaKnown RBP13.13□□□□□ -0.31
SYNE2-207ENST00000458046 MTRQ99707 1265 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CRISPLD2Q9H0B8 497 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 ZCCHC17Q9NP64 241 aaKnown RBP13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CCDC163A0A0D9SF12 145 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 N4BP3O15049 544 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 MFAP3LO75121 409 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 GYPCP04921 128 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CALM1P0DP23 149 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CALM2P0DP24 149 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CALM3P0DP25 149 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 MECOMQ03112 1051 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 ZNF569Q5MCW4 686 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 RSRC2Q7L4I2 434 aaKnown RBP13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CNTNAP5Q8WYK1 1306 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 CTAGE1Q96RT6 745 aa13.13□□□□□ -0.31
SYNE2-207ENST00000458046 RNF225M0QZC1 329 aaPredicted RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 TSPAN6O43657 245 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 TBC1D8O95759 1140 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 BMP15O95972 392 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 TSPAN7P41732 249 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 KRT31Q15323 416 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 CCDC24Q8N4L8 307 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 GOLGA1Q92805 767 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 ARAP2Q8WZ64 1704 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 IPO5O00410 1097 aaKnown RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 KIF5CO60282 957 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 COQ9O75208 318 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 TFRCP02786 760 aaKnown RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 SCG2P13521 617 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 NAP1L1P55209 391 aaKnown RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 C16orf54Q6UWD8 224 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 MARCH10Q8NA82 808 aaPredicted RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 NSUN4Q96CB9 384 aaKnown RBP13.12□□□□□ -0.31
SYNE2-207ENST00000458046 TAB2Q9NYJ8 693 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 BCORQ6W2J9 1755 aa13.12□□□□□ -0.31
SYNE2-207ENST00000458046 GRXCR2A6NFK2 248 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 DDAH1O94760 285 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 SEC13P55735 322 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 CT47A1Q5JQC4 288 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 C16orf87Q6PH81 154 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 RASGRP4Q8TDF6 673 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 DCP1AQ9NPI6 582 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 MYH2Q9UKX2 1941 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 TSPY2A6NKD2 308 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 FGRP09769 529 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 MAPK1P28482 360 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 PRDX5P30044 214 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 ZNF211Q13398 564 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 KIF4BQ2VIQ3 1234 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 PLEKHG4Q58EX7 1191 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 PDXDC2PQ6P474 469 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 RABGGTAQ92696 567 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 GPKOWQ92917 476 aaPredicted RBP eCLIP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 FRMD6Q96NE9 622 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 NUP88Q99567 741 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 NAA15Q9BXJ9 866 aaKnown RBP13.11□□□□□ -0.31
SYNE2-207ENST00000458046 ACAD8Q9UKU7 415 aa13.11□□□□□ -0.31
SYNE2-207ENST00000458046 GDAQ9Y2T3 454 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms