RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RIC8AQ9NPQ8 531 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 ZDHHC3Q9NYG2 299 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 PCSK1NQ9UHG2 260 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 ZMYM5Q9UJ78 669 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 GTF3C4Q9UKN8 822 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 SLC30A1Q9Y6M5 507 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 TNS3Q68CZ2 1445 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 TRPM1Q7Z4N2 1603 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 hCG_1984214I3L0E3 225 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ALDH1L1O75891 902 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 CTSOP43234 321 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 RPIAP49247 311 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 GEMIN4P57678 1058 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SNX16P57768 344 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 C1QTNF8P60827 252 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 DEUP1Q05D60 604 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 PTPN14Q15678 1187 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SLC4A8Q2Y0W8 1093 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 DAAM2Q86T65 1068 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 THNSL2Q86YJ6 484 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNF713Q8N859 430 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 TEX19Q8NA77 164 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 GSDMBQ8TAX9 411 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SNX21Q969T3 373 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 NECAB3Q96P71 396 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 UPF2Q9HAU5 1272 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 EPB41L4AQ9HCS5 686 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SEC31BQ9NQW1 1179 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 UBAP1Q9NZ09 502 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 OGFRQ9NZT2 677 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 LMCD1Q9NZU5 365 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 TPCN1Q9ULQ1 816 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ATP6V0A2Q9Y487 856 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 WASF2Q9Y6W5 498 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 RGPD3A6NKT7 1758 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 RGPD4Q7Z3J3 1758 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 CRYBG1Q9Y4K1 1723 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM221AA4D161 298 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ELL2O00472 640 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 AKR1B10O60218 316 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 HNRNPCP07910 306 aaKnown RBP eCLIP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ADD2P35612 726 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 UBASH3AP57075 661 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SART3Q15020 963 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 BRD3Q15059 726 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 POSTNQ15063 836 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 TAF7Q15545 349 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SEPT7Q16181 437 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 DBN1Q16643 649 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 MUM1Q2TAK8 710 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 IRGCQ6NXR0 463 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 CPLX2Q6PUV4 134 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 C16orf54Q6UWD8 224 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 CCNJLQ8IV13 435 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 PEX5LQ8IYB4 626 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 GIMAP8Q8ND71 665 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 USP33Q8TEY7 942 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ANKRD49Q8WVL7 239 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 GATAD2BQ8WXI9 593 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 APBA2Q99767 749 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 LGR6Q9HBX8 967 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 TMEM165Q9HC07 324 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SPON1Q9HCB6 807 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 BRD7Q9NPI1 651 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 ENAMQ9NRM1 1142 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 SQORQ9Y6N5 450 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 PARD3Q8TEW0 1356 aa5.44□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM153BP0C7A2 387 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 BTF3P20290 206 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 CWF19L2Q2TBE0 894 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 KRT26Q7Z3Y9 468 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 MYRIPQ8NFW9 859 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TBC1D5Q92609 795 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 HPS3Q969F9 1004 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 PMEPA1Q969W9 287 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ASIC4Q96FT7 647 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 C1orf74Q96LT6 269 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TACO1Q9BSH4 297 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TCHPQ9BT92 498 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM167BQ9BTA0 163 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 GPAMQ9HCL2 828 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 POLMQ9NP87 494 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 GPN3Q9UHW5 284 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 MRPS23Q9Y3D9 190 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 SPATA31A3Q5VYP0 1347 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 A0A1W2PNR3 127 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 SMTNL1A8MU46 457 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 STXBP3O00186 592 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 WNT7AO00755 349 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 FIBPO43427 364 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ORC4O43929 436 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 BAIAP3O94812 1187 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 SMC2O95347 1197 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 BAG4O95429 457 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 BPNT1O95861 308 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 RHOQP17081 205 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 CCNCP24863 283 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 HSD17B7P56937 341 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 NFKB2Q00653 900 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 IQCB1Q15051 598 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms