RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ALDH8A1Q9H2A2 487 aaPredicted RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 DDX41Q9UJV9 622 aaKnown RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 CHD9Q3L8U1 2897 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 MMP3P08254 477 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 SMAD3P84022 425 aaKnown RBP13.92□□□□□ -0.18
USP40-210ENST00000454354 PTPN11Q06124 597 aaPredicted RBP13.92□□□□□ -0.18
USP40-210ENST00000454354 KRT32Q14532 448 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 NFRKBQ6P4R8 1299 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 KCNV1Q6PIU1 500 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 TMTC3Q6ZXV5 915 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 Q7L0L9 218 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 RASEFQ8IZ41 740 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 TMEM199Q8N511 208 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 IL31RAQ8NI17 732 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 KCNB2Q92953 911 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 NOC4LQ9BVI4 516 aaKnown RBP13.92□□□□□ -0.18
USP40-210ENST00000454354 LRRC2Q9BYS8 371 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 PPP1R12CQ9BZL4 782 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 TRPV6Q9H1D0 765 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 HIPK3Q9H422 1215 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 SLC12A7Q9Y666 1083 aa13.92□□□□□ -0.18
USP40-210ENST00000454354 PIK3CDO00329 1044 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 SUPT20HL2P0C7V6 817 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 HOXD8P13378 290 aaPredicted RBP13.91□□□□□ -0.18
USP40-210ENST00000454354 CSF2RAP15509 400 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 RXRAP19793 462 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 CCND2P30279 289 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 NBPF20Q3BBV1 942 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 ADCK5Q3MIX3 580 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 APOA5Q6Q788 366 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 C16orf59Q7L2K0 433 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 DHX32Q7L7V1 743 aaKnown RBP13.91□□□□□ -0.18
USP40-210ENST00000454354 FANCBQ8NB91 859 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 AFG1LQ8WV93 481 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 RNPC3Q96LT9 517 aaKnown RBP13.91□□□□□ -0.18
USP40-210ENST00000454354 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP40-210ENST00000454354 MTMR10Q9NXD2 777 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 SEC63Q9UGP8 760 aaKnown RBP13.91□□□□□ -0.18
USP40-210ENST00000454354 MRVI1Q9Y6F6 885 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 TET1Q8NFU7 2136 aa13.91□□□□□ -0.18
USP40-210ENST00000454354 UMODL1Q5DID0 1318 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 KAT6AQ92794 2004 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 STAM2O75886 525 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 MYCLP12524 364 aaPredicted RBP13.9□□□□□ -0.18
USP40-210ENST00000454354 CYP2C18P33260 490 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 TMEM240Q5SV17 173 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 RASIP1Q5U651 963 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 PSRC1Q6PGN9 363 aaPredicted RBP13.9□□□□□ -0.18
USP40-210ENST00000454354 FCHSD1Q86WN1 690 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 MICU3Q86XE3 530 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 PPTC7Q8NI37 304 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 PIBF1Q8WXW3 757 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 KAT2BQ92831 832 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 WNT8AQ9H1J5 351 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 IL23AQ9NPF7 189 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 TRMT13Q9NUP7 481 aaKnown RBP13.9□□□□□ -0.18
USP40-210ENST00000454354 PTPRSQ13332 1948 aa13.9□□□□□ -0.18
USP40-210ENST00000454354 MEIS2O14770 477 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 HMGB1P09429 215 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 TGFB3P10600 412 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 CASTP20810 708 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 UBA1P22314 1058 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 RCAN1P53805 252 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 MRPS9P82933 396 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 LAMC2Q13753 1193 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 DGKDQ16760 1214 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 SESTD1Q86VW0 696 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 CMTR1Q8N1G2 835 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 INPP4AQ96PE3 977 aaPredicted RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 RBM28Q9NW13 759 aaKnown RBP13.89□□□□□ -0.19
USP40-210ENST00000454354 CNTNAP5Q8WYK1 1306 aa13.89□□□□□ -0.19
USP40-210ENST00000454354 MYO9BQ13459 2157 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 NID2Q14112 1375 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 TMEM265A0A087WTH1 108 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 F2P00734 622 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 NEFLP07196 543 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 ICAM3P32942 547 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 HSPA4P34932 840 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 CELF3Q5SZQ8 465 aaKnown RBP13.88□□□□□ -0.19
USP40-210ENST00000454354 ZNF697Q5TEC3 545 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 MYSM1Q5VVJ2 828 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 XRRA1Q6P2D8 792 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 USP17L6PQ6QN14 398 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 SYNE3Q6ZMZ3 975 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 RAB11FIP4Q86YS3 637 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 DHX37Q8IY37 1157 aaKnown RBP13.88□□□□□ -0.19
USP40-210ENST00000454354 CUL5Q93034 780 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 TCEANC2Q96MN5 208 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 BRPF3Q9ULD4 1205 aa13.88□□□□□ -0.19
USP40-210ENST00000454354 TRANK1O15050 2925 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.87□□□□□ -0.19
USP40-210ENST00000454354 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.87□□□□□ -0.19
USP40-210ENST00000454354 PITPNM1O00562 1244 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 ZBTB43O43298 467 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 EPB41L2O43491 1005 aaKnown RBP13.87□□□□□ -0.19
USP40-210ENST00000454354 GGPS1O95749 300 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 ACRP10323 421 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 CYP2C9P11712 490 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 CCL23P55773 120 aa13.87□□□□□ -0.19
USP40-210ENST00000454354 SP2Q02086 613 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms