RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ZNF653Q96CK0 615 aa8.46□□□□□ -1.06
NEDD9-204ENST00000448183 NOVA2Q9UNW9 492 aaKnown RBP8.46□□□□□ -1.06
NEDD9-204ENST00000448183 DNAJC8O75937 253 aaPredicted RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MX2P20592 715 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 PSMC2P35998 433 aaKnown RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 EIF4A3P38919 411 aaKnown RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 DMP1Q13316 513 aaPredicted RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 TAF11Q15544 211 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 C10orf76Q5T2E6 689 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 HACE1Q8IYU2 909 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 PCDHA4Q9UN74 947 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ATP7AQ04656 1500 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 RASGRF2O14827 1237 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 PDE8BO95263 885 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MOCS3O95396 460 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 IFNAR1P17181 557 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MAPK4P31152 587 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 GTF2IP78347 998 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 FAM133BQ5BKY9 247 aaKnown RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 SARM1Q6SZW1 724 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 TTLL7Q6ZT98 887 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 FAM186BQ8IYM0 893 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 GRAMD1CQ8IYS0 662 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 PRPF31Q8WWY3 499 aaKnown RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 NHEJ1Q9H9Q4 299 aaPredicted RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ANAPC5Q9UJX4 755 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 PCDHA1Q9Y5I3 950 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MYOM2P54296 1465 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 SGK1O00141 431 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 CIAO1O76071 339 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MMP1P03956 469 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 GAP43P17677 238 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 POLD1P28340 1107 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ESRRGP62508 458 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 E2F4Q16254 413 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ANKRD20A4Q4UJ75 823 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ANKRD20A8PQ5CZ79 823 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MUM1L1Q5H9M0 696 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ANKRD20A2Q5SQ80 823 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 ANKRD20A1Q5TYW2 823 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 SPDL1Q96EA4 605 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 FMO2Q99518 471 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 CCDC68Q9H2F9 335 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 THAP9Q9H5L6 903 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 CACYBPQ9HB71 228 aaKnown RBP8.45□□□□□ -1.06
NEDD9-204ENST00000448183 EPS15L1Q9UBC2 864 aa8.45□□□□□ -1.06
NEDD9-204ENST00000448183 MYO1CO00159 1063 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 HOXA7P31268 230 aaPredicted RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 MAGEA9P43362 315 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PHKA1P46020 1223 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ADCY1Q08828 1119 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PABPC4Q13310 644 aaKnown RBP eCLIP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 TMED2Q15363 201 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 DLGAP5Q15398 846 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 TTBK2Q6IQ55 1244 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 LARGE2Q8N3Y3 721 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 CCDC24Q8N4L8 307 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 POMGNT1Q8WZA1 660 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 CSRNP1Q96S65 589 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ORAI2Q96SN7 254 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 IFT122Q9HBG6 1241 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ADAM21Q9UKJ8 722 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 GJA3Q9Y6H8 435 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SAT1P21673 171 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PDE6BP35913 854 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 MSH2P43246 934 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 CYP27A1Q02318 531 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 MMS19Q96T76 1030 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ADPGKQ9BRR6 497 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 XAB2Q9HCS7 855 aaKnown RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 TLR7Q9NYK1 1049 aaKnown RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SRPRBQ9Y5M8 271 aaKnown RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PLXNC1O60486 1568 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PFDN6O15212 129 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ALAS1P13196 640 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ATP1A3P13637 1013 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 GCFC2P16383 781 aaKnown RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SLCO1A2P46721 670 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ZBTB17Q13105 803 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SLFNL1Q499Z3 407 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 MMS22LQ6ZRQ5 1243 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SUPT20HQ8NEM7 779 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SMCR8Q8TEV9 937 aaPredicted RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PLEKHF1Q96S99 279 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 EFHD1Q9BUP0 239 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 THRAP3Q9Y2W1 955 aaKnown RBP8.44□□□□□ -1.06
NEDD9-204ENST00000448183 MAST1Q9Y2H9 1570 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ZNF521Q96K83 1311 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SERPING1P05155 500 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ECE1P42892 770 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 NR5A1Q13285 461 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 CUL1Q13616 776 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 LRRC41Q15345 812 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 ARHGEF16Q5VV41 709 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SLFN13Q68D06 897 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PPP1R2P3Q6NXS1 205 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 NME8Q8N427 588 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 FAM133AQ8N9E0 248 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 SLC17A8Q8NDX2 589 aa8.44□□□□□ -1.06
NEDD9-204ENST00000448183 PPWD1Q96BP3 646 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms