RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 NDST4Q9H3R1 872 aa10.5□□□□□ -0.73
KLHL3-202ENST00000447439 ZHX3Q9H4I2 956 aa10.5□□□□□ -0.73
KLHL3-202ENST00000447439 RIOX1Q9H6W3 641 aa10.5□□□□□ -0.73
KLHL3-202ENST00000447439 E9PMD0 336 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 ATP8B1O43520 1251 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 CYLC1P35663 651 aaPredicted RBP10.49□□□□□ -0.73
KLHL3-202ENST00000447439 FAM193AP78312 1265 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 GFPT1Q06210 699 aaPredicted RBP10.49□□□□□ -0.73
KLHL3-202ENST00000447439 DNAAF5Q86Y56 855 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 COG1Q8WTW3 980 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 HDAC7Q8WUI4 952 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 USP40Q9NVE5 1235 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 SALL4Q9UJQ4 1053 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 BUB1O43683 1085 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 KRT83P78385 493 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 ARID5AQ03989 594 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 SKIDA1Q1XH10 827 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 CENPPQ6IPU0 288 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 SLC30A10Q6XR72 485 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 RAD54LQ92698 747 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 HAS1Q92839 578 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 RBM17Q96I25 401 aaKnown RBP10.49□□□□□ -0.73
KLHL3-202ENST00000447439 DEF6Q9H4E7 631 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 BCAS3Q9H6U6 928 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 MYO1AQ9UBC5 1043 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 DDX25Q9UHL0 483 aaKnown RBP10.49□□□□□ -0.73
KLHL3-202ENST00000447439 SIK3Q9Y2K2 1263 aa10.49□□□□□ -0.73
KLHL3-202ENST00000447439 KRT86O43790 486 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 ERLIN1O75477 346 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 IPO7O95373 1038 aaKnown RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 MYL1P05976 194 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 AMPD3Q01432 767 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 SLC7A5Q01650 507 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 NFRKBQ6P4R8 1299 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 NOC3LQ8WTT2 800 aaKnown RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 IFIH1Q9BYX4 1025 aaKnown RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 CUEDC2Q9H467 287 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 ZNF219Q9P2Y4 722 aaPredicted RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 RGL2O15211 777 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 KIF11P52732 1056 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 USP14P54578 494 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 KIF5AQ12840 1032 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 PTPROQ16827 1216 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 TMEM266Q2M3C6 531 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 CRY2Q49AN0 593 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 KRT79Q5XKE5 535 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 UNC13DQ70J99 1090 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 FAM114A1Q8IWE2 563 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 ZSCAN29Q8IWY8 852 aaPredicted RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 HNRNPLLQ8WVV9 542 aaKnown RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 SECISBP2LQ93073 1101 aaKnown RBP10.48□□□□□ -0.73
KLHL3-202ENST00000447439 PCDHA13Q9Y5I0 950 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 GAKO14976 1311 aa10.48□□□□□ -0.73
KLHL3-202ENST00000447439 POTEB3A0JP26 581 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 POTECB2RU33 542 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 EIF3CLB5ME19 914 aaKnown RBP10.47□□□□□ -0.73
KLHL3-202ENST00000447439 MEIS1O00470 390 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 AKR1B10O60218 316 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 ZNF543Q08ER8 600 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 SPA17Q15506 151 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 POTEBQ6S5H4 581 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 EIF3CQ99613 913 aaKnown RBP10.47□□□□□ -0.73
KLHL3-202ENST00000447439 TRIM34Q9BYJ4 488 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 KIAA1024Q9UPX6 916 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 CCDC66A2RUB6 948 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 PLCG2P16885 1265 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 SHMT1P34896 483 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 VAV2P52735 878 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 RASSF7Q02833 373 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 GABPAQ06546 454 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 COASYQ13057 564 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 PAPD7Q5XG87 772 aaKnown RBP10.47□□□□□ -0.73
KLHL3-202ENST00000447439 FOXR1Q6PIV2 292 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 LRRC55Q6ZSA7 311 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 ERGIC2Q96RQ1 377 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 NUP58Q9BVL2 599 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 SERPINB13Q9UIV8 391 aa10.47□□□□□ -0.73
KLHL3-202ENST00000447439 POTEB2H3BUK9 544 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 TRAF5O00463 557 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 PPEF1O14829 653 aaPredicted RBP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 TTLL1O95922 423 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 SLC1A4P43007 532 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 NT5C2P49902 561 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 FXR2P51116 673 aaKnown RBP eCLIP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 NAP1L1P55209 391 aaKnown RBP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 RNASE9P60153 205 aaKnown RBP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 KCNMA1Q12791 1236 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 TDRD12Q587J7 1177 aaKnown RBP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 MS4A14Q96JA4 679 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 P2RX7Q99572 595 aaKnown RBP10.46□□□□□ -0.73
KLHL3-202ENST00000447439 DBNDD1Q9H9R9 158 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 MAGEF1Q9HAY2 307 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 MYH1P12882 1939 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 SRCAPQ6ZRS2 3230 aa10.46□□□□□ -0.73
KLHL3-202ENST00000447439 CCDC40Q4G0X9 1142 aa10.46□□□□□ -0.74
KLHL3-202ENST00000447439 ASPRV1Q53RT3 343 aa10.46□□□□□ -0.74
KLHL3-202ENST00000447439 CDC42EP5Q6NZY7 148 aa10.46□□□□□ -0.74
KLHL3-202ENST00000447439 C15orf52Q6ZUT6 534 aaKnown RBP10.46□□□□□ -0.74
KLHL3-202ENST00000447439 CACNA2D4Q7Z3S7 1137 aa10.46□□□□□ -0.74
KLHL3-202ENST00000447439 PSTPIP2Q9H939 334 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms