RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SHROOM2Q13796 1616 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 CCDC80Q76M96 950 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 PARP9Q8IXQ6 854 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 HAUS7Q99871 368 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 TRPV6Q9H1D0 765 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 ADGRL2O95490 1459 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 DAB1O75553 588 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 CEP55Q53EZ4 464 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ING2Q9H160 280 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ATP8A2Q9NTI2 1148 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 NUB1Q9Y5A7 615 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 KDM5BQ9UGL1 1544 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 IGHDP01880 384 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 MAN2A1Q16706 1144 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 RMDN1Q96DB5 314 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 CCDC134Q9H6E4 229 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 RIMS2Q9UQ26 1411 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 MSH2P43246 934 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ABCE1P61221 599 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 CCDC85AQ96PX6 553 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 TRIM62Q9BVG3 475 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 GYG2O15488 501 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 PPIP5K2O43314 1243 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 DDAH1O94760 285 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 SERPINB1P30740 379 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 TTC37Q6PGP7 1564 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ZC3H18Q86VM9 953 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 FAM9CQ8IZT9 166 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 TRIM56Q9BRZ2 755 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 KCNK3O14649 394 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 SNAPC5O75971 98 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 TAC1P20366 129 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 MARCKSP29966 332 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 THAP9Q9H5L6 903 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 MAGEB6P1A0A0J9YX57 407 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 MORF4L2Q15014 288 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 DBNLQ9UJU6 430 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 MAP3K2Q9Y2U5 619 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 MYO1FO00160 1098 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 UAP1Q16222 522 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 NDUFA5Q16718 116 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 C4orf22Q6V702 233 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 SYT2Q8N9I0 419 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 FAM187AA6NFU0 413 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 M0R3G1 203 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 VSTM4Q8IW00 320 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 PKD2L2Q9NZM6 624 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 RPL26L1Q9UNX3 145 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 CD109Q6YHK3 1445 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 PRG4Q92954 1404 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 DAPK3O43293 454 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 SERPINB3P29508 390 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 STAT2P52630 851 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ATL2Q8NHH9 583 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 RBM41Q96IZ5 413 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 ARPP21Q9UBL0 812 aaPredicted RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 STAP2Q9UGK3 403 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 HSPA1AP0DMV8 641 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 HSPA1BP0DMV9 641 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 MYL6BP14649 208 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 SLC39A14Q15043 492 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 AKAP4Q5JQC9 854 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 ARHGEF10LQ9HCE6 1279 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 DNAJC12Q9UKB3 198 aa7.76□□□□□ -1.17
VPS53-204ENST00000437048 EDC4Q6P2E9 1401 aaKnown RBP7.76□□□□□ -1.17
VPS53-204ENST00000437048 TADA3O75528 432 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CHRNA3P32297 505 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ELF1P32519 619 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TRPC1P48995 793 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 GUCY2DQ02846 1103 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 HIC2Q96JB3 615 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MAGED4Q96JG8 741 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ZBTB18Q99592 522 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SERPINA10Q9UK55 444 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TBKBP1A7MCY6 615 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 XPOTO43592 962 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 MTX1Q13505 466 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 EFL1Q7Z2Z2 1120 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 PLA2G4DQ86XP0 818 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CYTH2Q99418 400 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 NACA2Q9H009 215 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 LRWD1Q9UFC0 647 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 APOBEC2Q9Y235 224 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 GMEB1Q9Y692 573 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ADGRA3Q8IWK6 1321 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 VWA3AA6NCI4 1184 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MPRIPQ6WCQ1 1025 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MSL3Q8N5Y2 521 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 KCNK16Q96T55 309 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 EYA3Q99504 573 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CXorf56Q9H5V9 222 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 C19orf44Q9H6X5 657 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 GPR108Q9NPR9 543 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ENOPH1Q9UHY7 261 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ARHGEF35A5YM69 484 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SNX1Q13596 522 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CUL4AQ13619 759 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CALCRLQ16602 461 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms