RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PRPF3O43395 683 aaKnown RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 SCG2P13521 617 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 IFNAR1P17181 557 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 ACLYP53396 1101 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 ATN1P54259 1190 aaPredicted RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 NKX3-2P78367 333 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 KCNA10Q16322 511 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 PFKFB3Q16875 520 aaPredicted RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 BRDTQ58F21 947 aaPredicted RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 USP17L6PQ6QN14 398 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 SEPT14Q6ZU15 432 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 TEX2Q8IWB9 1127 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 TRIM22Q8IYM9 498 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 C7orf61Q8IZ16 206 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 CCDC12Q8WUD4 166 aaPredicted RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 FERMT2Q96AC1 680 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 SLC26A6Q9BXS9 759 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 RNF26Q9BY78 433 aaPredicted RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 EHMT1Q9H9B1 1298 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 UPF2Q9HAU5 1272 aaKnown RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 NCOA5Q9HCD5 579 aaKnown RBP13.16□□□□□ -0.3
COL28A1-203ENST00000435823 BARHL2Q9NY43 387 aa13.16□□□□□ -0.3
COL28A1-203ENST00000435823 A0A1W2PQ45 241 aaPredicted RBP13.15□□□□□ -0.3
COL28A1-203ENST00000435823 A0A1W2PQY0 241 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 MYADML2A6NDP7 307 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 SPDYE3A6NKU9 549 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 STXBP3O00186 592 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 ADCY7P51828 1080 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 NEK4P51957 841 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 BEX3Q00994 111 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 STK3Q13188 491 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 FSCN1Q16658 493 aaKnown RBP13.15□□□□□ -0.3
COL28A1-203ENST00000435823 LRRC26Q2I0M4 334 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 KCNV1Q6PIU1 500 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 SLC39A5Q6ZMH5 540 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 VSIG10LQ86VR7 867 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 OR6J1Q8NGC5 347 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 PHKBQ93100 1093 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 GLT1D1Q96MS3 346 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 LARP6Q9BRS8 491 aaKnown RBP13.15□□□□□ -0.3
COL28A1-203ENST00000435823 SLKQ9H2G2 1235 aaPredicted RBP13.15□□□□□ -0.3
COL28A1-203ENST00000435823 STARD7Q9NQZ5 370 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 MRVI1Q9Y6F6 885 aa13.15□□□□□ -0.3
COL28A1-203ENST00000435823 FRMPD4Q14CM0 1322 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 KIAA1217Q5T5P2 1943 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 ALPK3Q96L96 1907 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 SMCO2A6NFE2 343 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 STAM2O75886 525 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 CDKL5O76039 1030 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 ASGR1P07306 291 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 CPT1AP50416 773 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 AK2P54819 239 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 SSRP1Q08945 709 aaKnown RBP13.14□□□□□ -0.31
COL28A1-203ENST00000435823 NTRK3Q16288 839 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 UBE2SQ16763 222 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 GNPTABQ3T906 1256 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 TMEM63BQ5T3F8 832 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 CCSAPQ6IQ19 270 aaPredicted RBP13.14□□□□□ -0.31
COL28A1-203ENST00000435823 XRRA1Q6P2D8 792 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 IL31RAQ8NI17 732 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 VTI1AQ96AJ9 217 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 C22orf23Q9BZE7 217 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 RIC8AQ9NPQ8 531 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 GTF3C3Q9Y5Q9 886 aa13.14□□□□□ -0.31
COL28A1-203ENST00000435823 ELP1O95163 1332 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 H0YGN5 161 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 CTAGE5O15320 804 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 CABYRO75952 493 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 ARIH2O95376 493 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 FOSP01100 380 aaPredicted RBP13.13□□□□□ -0.31
COL28A1-203ENST00000435823 GH1P01241 217 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 RTP1P59025 263 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 IRX5P78411 483 aaPredicted RBP13.13□□□□□ -0.31
COL28A1-203ENST00000435823 SNX17Q15036 470 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 C1orf53Q5VUE5 145 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 PCNX4Q63HM2 1172 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 TYW1BQ6NUM6 668 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 CCDC62Q6P9F0 684 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 CCDC148Q8NFR7 591 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 C6orf50Q9HD87 102 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 PCDHA6Q9UN73 950 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 ATP11BQ9Y2G3 1177 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 PCDHA8Q9Y5H6 950 aa13.13□□□□□ -0.31
COL28A1-203ENST00000435823 ESYT2A0FGR8 921 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 PFKFB2O60825 505 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 PPFIA3O75145 1194 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 DEXIO95424 95 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 PTGS1P23219 599 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 GNA11P29992 359 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 SCRN1Q12765 414 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 AP3B2Q13367 1082 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 PKN1Q16512 942 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 LY6KQ17RY6 165 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 TRIM60Q495X7 471 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 NLRX1Q86UT6 975 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 COPS5Q92905 334 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 ZFP91Q96JP5 570 aaPredicted RBP13.12□□□□□ -0.31
COL28A1-203ENST00000435823 POLR3EQ9NVU0 708 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 PRKAG2Q9UGJ0 569 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 DDX41Q9UJV9 622 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms