RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 E9PMD0 336 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 KCNK3O14649 394 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 AMPD3Q01432 767 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 IQCEQ6IPM2 695 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 CNNM4Q6P4Q7 775 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 FAM114A1Q8IWE2 563 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 CEP95Q96GE4 821 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 ZIM3Q96PE6 472 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 ARPP21Q9UBL0 812 aaPredicted RBP13.8□□□□□ -0.2
CDH3-202ENST00000429102 CAPN7Q9Y6W3 813 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 MYH10P35580 1976 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 COL1A1P02452 1464 aaPredicted RBP13.8□□□□□ -0.2
CDH3-202ENST00000429102 CEP104O60308 925 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 ERLIN2O94905 339 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 PRPF6O94906 941 aaKnown RBP13.8□□□□□ -0.2
CDH3-202ENST00000429102 DHTKD1Q96HY7 919 aaPredicted RBP13.8□□□□□ -0.2
CDH3-202ENST00000429102 PYM1Q9BRP8 204 aaKnown RBP13.8□□□□□ -0.2
CDH3-202ENST00000429102 ATP8A2Q9NTI2 1148 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 MCM3P25205 808 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 MAGEA9P43362 315 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 IKQ13123 557 aaPredicted RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 CEP85LQ5SZL2 805 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 TMED8Q6PL24 325 aaPredicted RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 KSR1Q8IVT5 923 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 BARHL2Q9NY43 387 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 MKRN1Q9UHC7 482 aaKnown RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 SFI1A8K8P3 1242 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 HGSO14964 777 aaPredicted RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 STAT3P40763 770 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 FAM98CQ17RN3 349 aaKnown RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 KRT79Q5XKE5 535 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 TTBK2Q6IQ55 1244 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 KCTD1Q719H9 257 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 LARP4BQ92615 738 aaKnown RBP13.79□□□□□ -0.2
CDH3-202ENST00000429102 NUP58Q9BVL2 599 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 KLRC1P26715 233 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 C12orf60Q5U649 245 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 NOX5Q96PH1 765 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 BCAS3Q9H6U6 928 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 SH2D4AQ9H788 454 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 STIM2Q9P246 746 aa13.79□□□□□ -0.2
CDH3-202ENST00000429102 A0A1W2PQC6 194 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 BTDP43251 543 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 SPAG5Q96R06 1193 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 C6orf229H3BNL8 230 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 MYO1FO00160 1098 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 COPB2P35606 906 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 CYP4A11Q02928 519 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 PLS1Q14651 629 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 DPH5Q9H2P9 285 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 KIAA1024Q9UPX6 916 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 KIAA0754O94854 1291 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 INPP5BP32019 993 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 KLHL30Q0D2K2 578 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 TTMPQ5BVD1 217 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 CT47A1Q5JQC4 288 aaPredicted RBP13.78□□□□□ -0.2
CDH3-202ENST00000429102 PPM1EQ8WY54 764 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 MMTAG2Q9BU76 263 aaKnown RBP13.78□□□□□ -0.2
CDH3-202ENST00000429102 IKZF4Q9H2S9 585 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 GOPCQ9HD26 462 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 TJP1Q07157 1748 aa13.78□□□□□ -0.2
CDH3-202ENST00000429102 TLDC2A0PJX2 215 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L15C9J2P7 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L13C9JLJ4 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L11C9JVI0 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L18D6R9N7 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L22D6RA61 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L17D6RBQ6 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L19D6RCP7 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L20D6RJB6 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 CDK8P49336 464 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L24Q0WX57 530 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 TMEM266Q2M3C6 531 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 USP17L6PQ6QN14 398 aa13.77□□□□□ -0.2
CDH3-202ENST00000429102 UBLCP1Q8WVY7 318 aaPredicted RBP13.77□□□□□ -0.2
CDH3-202ENST00000429102 CHORDC1Q9UHD1 332 aaPredicted RBP13.77□□□□□ -0.2
CDH3-202ENST00000429102 E7EVH7 732 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 ORC4O43929 436 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 BAG3O95817 575 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 TBC1D10BQ4KMP7 808 aaPredicted RBP13.77□□□□□ -0.21
CDH3-202ENST00000429102 HAUS3Q68CZ6 603 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 PAXIP1Q6ZW49 1069 aaPredicted RBP13.77□□□□□ -0.21
CDH3-202ENST00000429102 CCDC170Q8IYT3 715 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 OTUD6BQ8N6M0 293 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 TAF4BQ92750 862 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 TSG101Q99816 390 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 CLIC2O15247 247 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 GNA11P29992 359 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 GNAQP50148 359 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 CORO7P57737 925 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 IFT88Q13099 833 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 GRB10Q13322 594 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 ECM1Q16610 540 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 FBXO33Q7Z6M2 555 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 TADA2BQ86TJ2 420 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 RNPC3Q96LT9 517 aaKnown RBP13.77□□□□□ -0.21
CDH3-202ENST00000429102 MXD3Q9BW11 206 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 TLR10Q9BXR5 811 aa13.77□□□□□ -0.21
CDH3-202ENST00000429102 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.77□□□□□ -0.21
CDH3-202ENST00000429102 PLEKHG2Q9H7P9 1386 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms