RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 BORAQ6PGQ7 559 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 MILR1Q7Z6M3 343 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 GTF2IRD2Q86UP8 949 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 TTC9BQ8N6N2 239 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 NGRNQ9NPE2 291 aaKnown RBP8.17□□□□□ -1.1
LINC01040-201ENST00000425048 SLC6A11P48066 632 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 NCAPHQ15003 741 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 MROH9Q5TGP6 573 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 MCTP2Q6DN12 878 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 STK32CQ86UX6 486 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 NT5DC4Q86YG4 428 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 TRIM59Q8IWR1 403 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 PPP1R14AQ96A00 147 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 NKX2-4Q9H2Z4 354 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 INVSQ9Y283 1065 aa8.16□□□□□ -1.1
LINC01040-201ENST00000425048 TIMM13Q9Y5L4 95 aaPredicted RBP8.16□□□□□ -1.1
LINC01040-201ENST00000425048 CEP68Q76N32 757 aa8.15□□□□□ -1.1
LINC01040-201ENST00000425048 RIOX2Q8IUF8 465 aa8.15□□□□□ -1.1
LINC01040-201ENST00000425048 TXNDC5Q8NBS9 432 aaKnown RBP8.15□□□□□ -1.1
LINC01040-201ENST00000425048 FRS2Q8WU20 508 aa8.15□□□□□ -1.1
LINC01040-201ENST00000425048 C1QTNF3Q9BXJ4 246 aa8.15□□□□□ -1.1
LINC01040-201ENST00000425048 ZNF536O15090 1300 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 DDX3XO00571 662 aaKnown RBP eCLIP8.14□□□□□ -1.11
LINC01040-201ENST00000425048 GTF2A2P52657 109 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 ITGA1P56199 1179 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 RPL11P62913 178 aaKnown RBP8.14□□□□□ -1.11
LINC01040-201ENST00000425048 FAM126BQ8IXS8 530 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 FAM169BQ8N8A8 192 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 CHST13Q8NET6 341 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 NPLOC4Q8TAT6 608 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 TRMT2BQ96GJ1 504 aaKnown RBP8.14□□□□□ -1.11
LINC01040-201ENST00000425048 MRGPRX3Q96LB0 322 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 C8orf49Q96NF6 230 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 STRIP2Q9ULQ0 834 aa8.14□□□□□ -1.11
LINC01040-201ENST00000425048 ZBTB7CA1YPR0 619 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 C1QTNF3-AMACRE9PGA6 284 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 TNFRSF1AP19438 455 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 MFAP1P55081 439 aaKnown RBP8.13□□□□□ -1.11
LINC01040-201ENST00000425048 NKX3-2P78367 333 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 ZXDAP98168 799 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 PRR31Q5SQ13 230 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 E4F1Q66K89 784 aaPredicted RBP8.13□□□□□ -1.11
LINC01040-201ENST00000425048 GLB1LQ6UWU2 654 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 LCORQ96JN0 433 aaPredicted RBP8.13□□□□□ -1.11
LINC01040-201ENST00000425048 X6R8D5 127 aa8.13□□□□□ -1.11
LINC01040-201ENST00000425048 ZNF20P17024 532 aa8.12□□□□□ -1.11
LINC01040-201ENST00000425048 HOXC12P31275 282 aa8.12□□□□□ -1.11
LINC01040-201ENST00000425048 C9orf131Q5VYM1 1079 aa8.12□□□□□ -1.11
LINC01040-201ENST00000425048 DIO2Q92813 273 aa8.12□□□□□ -1.11
LINC01040-201ENST00000425048 YIPF4Q9BSR8 244 aa8.12□□□□□ -1.11
LINC01040-201ENST00000425048 MYO1BO43795 1136 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 FPR2P25090 351 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 STAT5AP42229 794 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 HDLBPQ00341 1268 aaKnown RBP8.11□□□□□ -1.11
LINC01040-201ENST00000425048 SURF1Q15526 300 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 ANAPC16Q96DE5 110 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 KRTAP3-1Q9BYR8 98 aa8.11□□□□□ -1.11
LINC01040-201ENST00000425048 C9orf118A6NHY6 69 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 MATN3O15232 486 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 BCL6P41182 706 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 CYP4F3Q08477 520 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 CR1LQ2VPA4 569 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 Q8N1Y9 231 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 TMEM169Q96HH4 297 aa8.1□□□□□ -1.11
LINC01040-201ENST00000425048 SSBP3Q9BWW4 388 aaPredicted RBP8.1□□□□□ -1.11
LINC01040-201ENST00000425048 COA3Q9Y2R0 106 aaPredicted RBP8.1□□□□□ -1.11
LINC01040-201ENST00000425048 AKAP8O43823 692 aaKnown RBP8.09□□□□□ -1.11
LINC01040-201ENST00000425048 CHRNA2Q15822 529 aa8.09□□□□□ -1.11
LINC01040-201ENST00000425048 PRAMEF18Q5VWM3 479 aa8.09□□□□□ -1.11
LINC01040-201ENST00000425048 DVL3Q92997 716 aaPredicted RBP8.09□□□□□ -1.11
LINC01040-201ENST00000425048 CCDC140Q96MF4 163 aa8.09□□□□□ -1.11
LINC01040-201ENST00000425048 LGR4Q9BXB1 951 aa8.09□□□□□ -1.11
LINC01040-201ENST00000425048 TMEFF2Q9UIK5 374 aaPredicted RBP8.09□□□□□ -1.11
LINC01040-201ENST00000425048 HGSO14964 777 aaPredicted RBP8.08□□□□□ -1.12
LINC01040-201ENST00000425048 MEFVO15553 781 aaPredicted RBP8.08□□□□□ -1.12
LINC01040-201ENST00000425048 CYP1A1P04798 512 aaPredicted RBP8.08□□□□□ -1.12
LINC01040-201ENST00000425048 IL13P35225 146 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 ECI1P42126 302 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 KCNAB2Q13303 367 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 LIMS2Q7Z4I7 341 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 CCDC103Q8IW40 242 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 BTN2A2Q8WVV5 523 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 TOE1Q96GM8 510 aaKnown RBP8.08□□□□□ -1.12
LINC01040-201ENST00000425048 LRP2BPQ9P2M1 347 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 ZNF652Q9Y2D9 606 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 INPP5FQ9Y2H2 1132 aa8.08□□□□□ -1.12
LINC01040-201ENST00000425048 ARNTLO00327 626 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 CYP7B1O75881 506 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 CPP00450 1065 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 SNRPB2P08579 225 aaKnown RBP8.07□□□□□ -1.12
LINC01040-201ENST00000425048 ADAM9Q13443 819 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 SV2CQ496J9 727 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 PLEKHH3Q7Z736 793 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 TGIF2Q9GZN2 237 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 L2HGDHQ9H9P8 463 aa8.07□□□□□ -1.12
LINC01040-201ENST00000425048 LAMTOR5O43504 91 aa8.06□□□□□ -1.12
LINC01040-201ENST00000425048 SCG5P05408 212 aa8.06□□□□□ -1.12
LINC01040-201ENST00000425048 ZNF28P17035 718 aa8.06□□□□□ -1.12
LINC01040-201ENST00000425048 NLRP10Q86W26 655 aa8.06□□□□□ -1.12
LINC01040-201ENST00000425048 KREMEN2Q8NCW0 462 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms